Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120953.seq
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    35   0.041
U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical pr...    34   0.072
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical p...    28   4.8  
AL132862-13|CAB60543.1|  385|Caenorhabditis elegans Hypothetical...    28   4.8  
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    28   4.8  
AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     27   8.3  
AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = +1

Query: 280 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 459
           M   KL   +CF   ++     +P D   ++PV  L  C H +C +C           CP
Sbjct: 1   MNLEKLSELLCFQCGKLYESITKPDDEAILVPV--LGACLHSICILC--ATGLESPNSCP 56

Query: 460 LCRVESLHFNVYS 498
           +C       N+ S
Sbjct: 57  ICENPEAFGNIIS 69


>U53337-2|AAA96184.1|  639|Caenorhabditis elegans Hypothetical
           protein R02E12.4 protein.
          Length = 639

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +1

Query: 280 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 459
           +EF  +QC+ICF V    N+  +P+  L         TCKH +C+ C           CP
Sbjct: 19  LEFEDVQCHICFQV----NH--EPVTFL---------TCKHSICAGCAGRWLSSCSV-CP 62

Query: 460 LC--RVESLHFN 489
           +C  RV  +H N
Sbjct: 63  MCRTRVREIHLN 74


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 280 MEFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCP 459
           + FV L C+ C S+ +   +F     R  +       +C H LCS C           CP
Sbjct: 22  LHFVSLVCSGCDSLGDRDRFFDNDKKRPCV------SSCNHSLCSQC-----FDKFTECP 70

Query: 460 LCR 468
           +C+
Sbjct: 71  ICK 73


>Z81051-12|CAB02861.2|  228|Caenorhabditis elegans Hypothetical
           protein C55A6.1 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 349 PIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPLCR 468
           PI +  +I    +  C H+ C +C           CP+CR
Sbjct: 13  PICQCKMIVPTTIPACGHKFCFICLKGVYMNDMGGCPMCR 52


>AL132862-13|CAB60543.1|  385|Caenorhabditis elegans Hypothetical
           protein Y73F8A.18 protein.
          Length = 385

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 548 CDTRHAAFNHVHNVRFML*TLKCKLSTLHRGHGIFFRFL 432
           CD + +  N    ++F     KC   +LH G  ++ +FL
Sbjct: 343 CDNKSSKLNRKFFLKFRFNEFKCSSCSLHCGRKLYMQFL 381


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/82 (25%), Positives = 28/82 (34%)
 Frame = +1

Query: 283 EFVKLQCNICFSVAEIKNYFMQPIDRLTIIPVLELDTCKHQLCSMCXXXXXXXXXXPCPL 462
           E+V  +C ICF   E+      P           +  C H  C  C           CP 
Sbjct: 132 EYVDDECKICFEKYEVTGN-RSP----------RVFNCGHTYCESCIQVCKHQFQIKCPF 180

Query: 463 CRVESLHFNVYSINRTLWT*LN 528
           C   S   N +S N+ +   LN
Sbjct: 181 CTTTSYQIN-FSTNKLILEVLN 201


>AC017117-1|AAF16618.1|  338|Caenorhabditis elegans Hypothetical
           protein F43C11.8 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 280 MEFVKLQ-CNICFSVAEIKNYFMQPIDRLTIIPVLELDT----CKHQLCSMCXXXXXXXX 444
           M F++ + CN  FS A  +N   + + +L ++P L+L      C H +C  C        
Sbjct: 1   MSFIECEICNEDFSSATDEN-IPRILSKL-LLPFLKLKNKNSGCGHTICHGCAEKLLQNS 58

Query: 445 XXPCPLCR 468
              CP CR
Sbjct: 59  MILCPFCR 66


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 107 RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 199
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 338 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 371


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 391 TCKHQLCSMCXXXXXXXXXXPCPLCR 468
           TC H LC  C           CP CR
Sbjct: 26  TCGHALCHKCITAMVNNSTVECPFCR 51


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +2

Query: 107 RSAVFGI---PNN*FRKQLFAKRLYIKSKSERYF 199
           RS VFGI   PN    + L A +LYI+S+ E +F
Sbjct: 230 RSCVFGIGDVPNLMKSRALVAHKLYIESEPEAFF 263


>AF016666-6|AAB66086.1|  292|Caenorhabditis elegans Hypothetical
           protein B0281.8 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +1

Query: 394 CKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSI 501
           C H LC  C           CP CR E     VY+I
Sbjct: 28  CSHTLCEGCIKKLLKNGRVVCPFCR-EPTEVPVYNI 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,732,498
Number of Sequences: 27780
Number of extensions: 265237
Number of successful extensions: 636
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)