Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120953.seq
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.8  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 6/12 (50%), Positives = 6/12 (50%)
 Frame = +2

Query: 230 CAWCCSRRKGGG 265
           C WCC    G G
Sbjct: 12  CCWCCDNLGGPG 23


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 354 YWLHKIIFNFCNRKTN 307
           + L K   ++CN KTN
Sbjct: 209 FTLEKFFTDYCNSKTN 224


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 354 YWLHKIIFNFCNRKTN 307
           + L K   ++CN KTN
Sbjct: 209 FTLEKFFTDYCNSKTN 224


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 621 LTDFFQTTRWPKXRHQNXRLFYSIVRHSS 535
           + D F T    K   +N  LF+ +V +S+
Sbjct: 299 IQDIFNTQSSAKVMSKNGVLFFGLVNNSA 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,459
Number of Sequences: 438
Number of extensions: 3203
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)