Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120953.seq
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12270.1 68417.m01944 copper amine oxidase family protein con...    30   1.4  
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa...    29   2.5  
At4g12290.1 68417.m01947 copper amine oxidase, putative similar ...    28   5.8  
At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa...    28   5.8  

>At4g12270.1 68417.m01944 copper amine oxidase family protein
           contains similarity to copper amine oxidase [Cicer
           arietinum] gi|3819099|emb|CAA08855; contains Pfam
           domains PF02728: Copper amine oxidase, N3 domain and
           PF02727: Copper amine oxidase, N2 domain
          Length = 460

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 310 CFSVAEIKNYFMQPIDRLTIIPVLELDT 393
           CFS  +  N++M+PI+ LT++   +LDT
Sbjct: 236 CFSTQDTPNFYMRPIEGLTLL--FDLDT 261


>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles: PF00097 zinc
           finger, C3HC4 type (RING finger), PF01697 Domain of
           unknown function
          Length = 913

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = +1

Query: 391 TCKHQLCSMCXXXXXXXXXXPCPLCRVESLHFNVYSINRTLW 516
           TC H  C  C           CP CR    +    ++N  LW
Sbjct: 738 TCGHSFCKKCLRSAADKCGRKCPKCRQLIGNGRYCTVNTVLW 779


>At4g12290.1 68417.m01947 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 566

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 310 CFSVAEIKNYFMQPIDRLTIIPVLELDT 393
           CF      N++M+PI+ LTI+  ++LDT
Sbjct: 58  CFMTQGTPNFYMRPIEGLTIL--IDLDT 83


>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 211

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +1

Query: 382 ELDTCKHQLCSMCXXXXXXXXXXPCPLCR--VESLH 483
           E+ TC H     C           CPLCR  V+ LH
Sbjct: 175 EMPTCSHYFHEPCLTEWLTRDNNSCPLCRKPVDKLH 210


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,496,772
Number of Sequences: 28952
Number of extensions: 231633
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)