Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120952.seq
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     30   1.3  

>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -1

Query: 258  LYQSIELVFLFKIASSACSI---SNFFRTLLAL*LGMSSTLDSVFLLIMAGLTTIMNTRN 88
            L ++ +L  L KI S  C I   +++  TLL    G    LD + ++    +T I  T  
Sbjct: 1233 LLKNADLQILAKIPSICCLILLGNSYDDTLLTFNKGEFPKLD-LLIVECPTITNISFTEG 1291

Query: 87   NMSRYKKMLFSFLSYTKLNMVSAPNNL 7
                 +K+++SF   TK+N +S  NNL
Sbjct: 1292 AAPMLEKIIWSF---TKMNSLSGINNL 1315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,920,169
Number of Sequences: 37544
Number of extensions: 181157
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)