Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120952.seq
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57718| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_57718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 133 FTYNGRADDDNEHEKQYEQIQKD 65
           F+++G +D DN H    EQ+QKD
Sbjct: 16  FSHSGSSDTDNPHRIMAEQLQKD 38


>SB_46577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 432 KHVNYSFKF--KRKXLVRIDLFAQPIAKSGFDHGHLSGERCRFDQF 301
           +HV Y  KF  +R    R+  F + +A+  +DH  LSG  C  +QF
Sbjct: 178 EHVQYEHKFDGQRSNGDRMRTF-KAMARVNYDHERLSGGSCDTEQF 222


>SB_16688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 112 DDDNEHEKQYEQIQKDAVFLFVI 44
           DDD E   Q    Q DAVFLFV+
Sbjct: 124 DDDFESVSQVGSTQSDAVFLFVV 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,359,551
Number of Sequences: 59808
Number of extensions: 228432
Number of successful extensions: 476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)