Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120952.seq
         (624 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98185-1|CAA66860.1|  123|Anopheles gambiae histone H2B protein.       26   0.85 
Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein...    25   2.0  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   4.5  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   6.0  

>X98185-1|CAA66860.1|  123|Anopheles gambiae histone H2B protein.
          Length = 123

 Score = 26.2 bits (55), Expect = 0.85
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 373 EQVYPDKXFSLKLKRVINMFLND 441
           +QV+PD   S K   ++N F+ND
Sbjct: 45  KQVHPDTGISSKAMSIMNSFVND 67


>Y17700-1|CAA76820.1|  122|Anopheles gambiae hypothetical protein
           protein.
          Length = 122

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 153 KTYRVIKLRASEKNWKSSKRLMRF*TKIPAQ*IDISAR*NV 275
           + YR +K R  E + + + ++     K+PA   ++SAR NV
Sbjct: 68  QAYRELKQRCQEAHDERTAKVNAIYEKLPAYLSEVSARVNV 108


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 370 CEQVYPDKXFSLKLKR 417
           CE+ YPD  F++ L+R
Sbjct: 222 CEEPYPDIIFNITLRR 237


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 453 IXNXIV*KHVNYSFKFKRKXLVRIDLFAQPI 361
           + + ++ K  +Y+F FK+  L R+DLF   I
Sbjct: 623 LNDNLISKVQSYTF-FKKPNLTRVDLFGNKI 652


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,021
Number of Sequences: 2352
Number of extensions: 8091
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)