Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120952.seq
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical p...    27   8.2  
Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical...    27   8.2  

>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 131 KNTESNVEDIPSHKAKSVRKKLEIEQALDAIL 226
           +N++S  + I   K K  R+++E+E  LDA L
Sbjct: 681 RNSKSKKDKISKEKKKKERERIELESQLDAEL 712


>Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 284 IKLDILTSTYINLLSWYFCLKSHQALARFPIFFGRS*LYDSVCLL 150
           IK + +  + I L+S+ F L + QAL R  IF   + L   VCLL
Sbjct: 28  IKFNCIFISTIVLISYCFILLAIQALLRHNIFSNSTRLILIVCLL 72


>Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 284 IKLDILTSTYINLLSWYFCLKSHQALARFPIFFGRS*LYDSVCLL 150
           IK + +  + I L+S+ F L + QAL R  IF   + L   VCLL
Sbjct: 28  IKFNCIFISTIVLISYCFILLAIQALLRHNIFSNSTRLILIVCLL 72


>Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 267 NEHLYQSIELVFLFKIASSACSISNFFRTLLAL*L-GMSSTLDSVFL 130
           NE   + IEL+F   +  SA +++ FF   L + + G+   L+S+FL
Sbjct: 167 NEQSARIIELLFHHVVVLSAFAVTMFFNRFLGVVVFGLLMELNSIFL 213


>AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 267 NEHLYQSIELVFLFKIASSACSISNFFRTLLAL*L-GMSSTLDSVFL 130
           NE   + IEL+F   +  SA +++ FF   L + + G+   L+S+FL
Sbjct: 167 NEQSARIIELLFHHVVVLSAFAVTMFFNRFLGVVVFGLLMELNSIFL 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,890,407
Number of Sequences: 27780
Number of extensions: 181300
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)