Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120952.seq
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   3.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.2  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.2  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 370 CEQVYPDKXFSLKLKR 417
           CE+ YPD  F++ L+R
Sbjct: 219 CEEPYPDIVFNITLRR 234


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 276 GHFNEHLYQSIELVFL 229
           G+FNEH+ + I  +FL
Sbjct: 77  GNFNEHVSREIAKIFL 92


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 370 CEQVYPDKXFSLKLKR 417
           C++ YPD  F++ L+R
Sbjct: 218 CDEPYPDIFFNITLRR 233


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 379 VYPDKXFSLKLKRVINMF 432
           V+P   FSL L +V+++F
Sbjct: 139 VHPSATFSLDLNKVVSVF 156


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 99  NTRNNMSRYKKMLFSFLSYTKLNMVSAP 16
           N  NN + Y K L+  ++Y +   V  P
Sbjct: 96  NYNNNYNNYNKKLYYNINYIEQIPVPVP 123


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 397 FSLKLKRVINMFLNDXI 447
           F +K+KR  N+F+N+ +
Sbjct: 267 FEMKIKRKHNVFVNNIL 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,323
Number of Sequences: 438
Number of extensions: 2084
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)