Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120951.seq
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch...    26   5.3  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   7.0  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    25   7.0  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.3  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.3  

>SPBC543.08 |||phosphoinositide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -1

Query: 314 FSFVLRHGVISTYTKIFWG 258
           FSF+L +G+ +T TK+ +G
Sbjct: 177 FSFILNNGIKATSTKVLFG 195


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 560 CRCFTSAQASRDGSFFF 510
           CRC T+  A+  G+FFF
Sbjct: 9   CRCSTALSAAAAGTFFF 25


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 520 EPSRDAWADVKHRHYFVKICRKEQIVD 600
           E S D W ++K  HYF    +K  + D
Sbjct: 199 EASFDLWEEIKDVHYFTLAVQKRAMQD 225


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 617 PYFSSLSTICSFLHIFTK*C 558
           P+F+ LS +C  L+ F K C
Sbjct: 133 PFFNMLSFVCEMLYPFCKDC 152


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 241 PDRCFRSIVETPTEIPQRSRDKSPWRQIF*DHE 143
           P+     IV+ P+E+ + + ++S W+ I  D E
Sbjct: 163 PESLVVEIVDLPSEVTKDTAEESVWKDIGLDQE 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,840
Number of Sequences: 5004
Number of extensions: 51619
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)