Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120951.seq
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9)           29   4.2  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   7.4  

>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 523 PSRDAWADVKHRHYF---VKICRKEQIVDR-ELKYG 618
           P R  WA+++HRH+F   VKI  K +  +    KYG
Sbjct: 733 PKRPGWANIQHRHHFSNVVKITSKRKHPELITFKYG 768


>SB_33123| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=7.9)
          Length = 271

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = +1

Query: 523 PSRDAWADVKHRHYF---VKICRKEQIVDR-ELKYG 618
           P R  WA ++HRH+F   VKI  K +  +    KYG
Sbjct: 149 PKRPGWAHIQHRHHFSNVVKITSKRKHPELITFKYG 184


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 328  SDYVFFLLFFVMG*YQLTQKYFGVILKKF 242
            S Y+FF++F ++G + +   + GVI+  F
Sbjct: 2306 SGYIFFVIFILIGAFFVLNLFVGVIIDNF 2334


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,138,496
Number of Sequences: 59808
Number of extensions: 345382
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)