Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120950.seq
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    28   1.3  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   5.1  
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.9  

>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 40  KPETPRLLEYIDSNSDSSDTAT 105
           K E+ R LE+ DSNSDS D ++
Sbjct: 498 KGESARYLEHADSNSDSEDLSS 519


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 70   IDSNSDSSDTATCDLDSRTLPLTPLNFILSDDDHTVCDSSDLQYDSFVDM 219
            I  NSD +D    D  S   P       +S    T+ D   L+YDS V++
Sbjct: 1155 IYDNSDDTDYTVNDRSSPGSPFPIETETISSITDTLSDKQKLKYDSSVNI 1204


>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 130 PLTPLNFILSDDDHTVCDSSDLQYD 204
           P TPLNF+  ++D  V +   L+ D
Sbjct: 32  PKTPLNFVFKENDSHVSNGVGLKKD 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,196
Number of Sequences: 5004
Number of extensions: 45978
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)