Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120950.seq
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1175 + 28168007-28170058                                         32   0.32 
08_01_0462 + 4072369-4072630,4072732-4072814,4072937-4073020,407...    29   4.0  

>06_03_1175 + 28168007-28170058
          Length = 683

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 91  SDTATCDLDSRTLPLTPLNFILSDDDHT 174
           +DTATCD D+R  PL P   ++  D+ T
Sbjct: 462 NDTATCDADARATPLPPEALLIPFDNRT 489


>08_01_0462 +
           4072369-4072630,4072732-4072814,4072937-4073020,
           4073509-4073584,4073712-4073784,4073878-4073951,
           4074158-4074251,4074374-4074443
          Length = 271

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 234 ELKLPHIYKRVVLQIGTVAHRVVVIGQDE 148
           E   P I+KR + QIG  A + V +G DE
Sbjct: 206 EKPAPEIFKRALDQIGVEASKAVHVGDDE 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,043
Number of Sequences: 37544
Number of extensions: 274707
Number of successful extensions: 584
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)