Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120950.seq
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.76 
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)                      31   0.76 
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   29   4.1  
SB_8731| Best HMM Match : HTH_psq (HMM E-Value=2.7)                    28   7.1  
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)              27   9.4  

>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 68  TLTATVTAQTRQRVTWTVGRFR*LLSTSSCPMTTTRCATVPICSTT 205
           T+TATVTA T   VT T      +  T +  +T T  ATV + +TT
Sbjct: 236 TVTATVTAATTVTVTVTATAATTVTVTVTATVTATVTATVTVTATT 281


>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
          Length = 269

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 68  TLTATVTAQTRQRVTWTVGRFR*LLSTSSCPMTTTRCATVPICSTT 205
           T+TATVTA T   VT T      +  T +  +T T  ATV + +TT
Sbjct: 213 TVTATVTAATTVTVTVTATAATTVTVTVTATVTATVTATVTVTATT 258


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 22  ESD-SSLKPETPRLLEYIDSNSDSSDTATCDLDSRTLPLT 138
           E+D   L+   P L EY+D + D+++ +  D+   T P+T
Sbjct: 479 ENDLQQLQTSVPELSEYLDKSYDANNISMLDVTLSTTPIT 518


>SB_8731| Best HMM Match : HTH_psq (HMM E-Value=2.7)
          Length = 176

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 513 SNNIYKRYKLTTKEGNDMVTGVAY-HRALYGQPITV 409
           S  + +RY  T +E   +V G  Y H  +YG+P+TV
Sbjct: 11  STAVKQRYSQTEREVLAVVWGCEYFHLYIYGKPVTV 46


>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 689

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 68  TLTATVTAQTRQRVTWTVGRFR*LLSTSSCPMTTTRCATVPICST 202
           T TAT TA     VT T      +++T++  +T T  ATV   +T
Sbjct: 441 TATATATATATATVTTTATATVTVIATATATVTVTATATVTATAT 485


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,529
Number of Sequences: 59808
Number of extensions: 354633
Number of successful extensions: 863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)