Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120949.seq
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09560.2 68416.m01136 lipin family protein contains Pfam prof...    30   1.5  
At3g09560.1 68416.m01135 lipin family protein contains Pfam prof...    30   1.5  

>At3g09560.2 68416.m01136 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 904

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 46  ETPXXLEYIDSNSDSSDTATCXLGQSDASAD 138
           ETP   EYID   +SSDTA     + DA  D
Sbjct: 242 ETPWDTEYIDKVEESSDTANIASDKVDAIND 272


>At3g09560.1 68416.m01135 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 904

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 46  ETPXXLEYIDSNSDSSDTATCXLGQSDASAD 138
           ETP   EYID   +SSDTA     + DA  D
Sbjct: 242 ETPWDTEYIDKVEESSDTANIASDKVDAIND 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,361,955
Number of Sequences: 28952
Number of extensions: 160227
Number of successful extensions: 265
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)