Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120945.seq
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   1.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   3.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   4.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   6.3  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 507 CNSFNSYGGIENNIFPLGRSV 569
           CN   SY GI++ ++P  RS+
Sbjct: 620 CNDAGSYCGIKDKLYPDRRSM 640


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 227 FIQINKSIYSPVKIDIHHFMNSEKG 153
           FI++ +  Y P++    H  NS  G
Sbjct: 26  FIELQQHGYGPLRTSYQHHFNSPAG 50


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/39 (23%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 380 IQIYANFYAIENVKKLALSPFIELYYHFKFLTI-TRVIR 493
           I ++ +   I  ++   LSP ++++Y F+ + + T V++
Sbjct: 291 IHVWTSKEKISFLRGFWLSPAVDMFYEFQIIELMTSVVK 329



 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/40 (17%), Positives = 19/40 (47%)
 Frame = +2

Query: 371 SHSIQIYANFYAIENVKKLALSPFIELYYHFKFLTITRVI 490
           ++ IQ++         K    S  +++YY F  +++  ++
Sbjct: 153 TYGIQVFGTMQRTSFFKTFLNSCLMDVYYEFLLISLINIL 192


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 616 NFNQLINNHRPTSNTRTLLPSGKILFSIPPYELNE 512
           +FN+ +   R       L  + K L S PP+E+ +
Sbjct: 240 HFNRYLTRRRRIEIAHALCLTNKNLVSKPPHEVEK 274


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 567 RSYQVEKYYFRSLRTN*TNYNSSYTRITR 481
           R+YQV    ++  +TN  +Y  +Y    R
Sbjct: 358 RAYQVAVLEYKGTQTNYPSYEPTYDNSRR 386


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,093
Number of Sequences: 336
Number of extensions: 2733
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)