Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120945.seq
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    28   1.2  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    26   5.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   5.0  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   5.0  
SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|c...    25   8.8  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   8.8  
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c...    25   8.8  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 340 SFPSDERTQTIPFHTNIR*LLRYR 411
           SFPS  RT+ + +HT +R +L+ R
Sbjct: 7   SFPSGSRTKAVRYHTLLRPILQQR 30


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 569 DAPTKWKNIIFDPSVRIKRITI 504
           D P   K + F PSV++K +T+
Sbjct: 632 DTPESAKKVTFHPSVKLKSVTL 653


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 308  KFKPILYAVGTASL-ATNVRKLSHSIQIYANFYAIENVKKLALSPFIELYYHFKF 469
            K K ++Y   + +L AT + K++ S  +  N  AI N   +  + FIEL+  F F
Sbjct: 1004 KCKLLVYNRQSGTLTATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSF 1058


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 129 NLTFVRKFTFFGIHEVMNVYFDRTINTFIDLYEPVISRVFVSAVDTC 269
           NL+FV + T      V+ +  D+ +NT +  +EP +    + A+D C
Sbjct: 552 NLSFVNETTVSVDKVVICIPMDK-LNTHLITFEPPLEEKKLKAIDRC 597


>SPBC16E9.07 |mug100||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 138 FVRKFTFFGIHEVMNVYFDRTINTFIDLYEPVISR 242
           FVR F   G  E +N+   R I TFI     VI +
Sbjct: 76  FVRLFFLLGDSERVNLCIKRLIYTFIGSINSVIDK 110


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +2

Query: 578 RCGPMIVD*LIKI 616
           +CGPM++D LIKI
Sbjct: 49  KCGPMVLDALIKI 61


>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 594 IIGPHLTLGRSYQVEKYYFRSLRTN 520
           + GP+  +  +YQ E YY+ S R+N
Sbjct: 244 VSGPYRRVAFTYQDENYYYISGRSN 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,463,747
Number of Sequences: 5004
Number of extensions: 47899
Number of successful extensions: 132
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)