Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120945.seq
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990...    29   3.9  
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851...    27   9.0  

>04_04_1163 -
           31398565-31398654,31398729-31398812,31398893-31399037,
           31399118-31399239,31399338-31399376,31399491-31399601,
           31399682-31399804,31399946-31400032,31400136-31400207,
           31400349-31400621,31400704-31400895,31400988-31401171,
           31401339-31401480,31401578-31401821,31401959-31402603,
           31403024-31403293
          Length = 940

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 26/72 (36%), Positives = 30/72 (41%)
 Frame = -2

Query: 592 HRPTSNTRTLLPSGKILFSIPPYELNELQF*LHTYHACDCEKLKMIIQFNEWA*CEFFNV 413
           HR   N   L+  G    SIPPY L          H+   E L  II     A C   N+
Sbjct: 317 HRVNCNQTALVLGGGASASIPPYSLFASPGASVPLHSEIVEHLASII---APALCP-SNI 372

Query: 412 LDSVKVSVYLYG 377
           L  VK S +LYG
Sbjct: 373 LPKVKFSTFLYG 384


>09_02_0393 +
           8510089-8510274,8510450-8510806,8510889-8511011,
           8511209-8511523,8511576-8511682,8512559-8512629,
           8512952-8513029,8513390-8513454,8514224-8514274,
           8514373-8514414,8514785-8515105,8515154-8517880
          Length = 1480

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 340 CSNCIQNWLKFYARENVKKLALSTQVSTAET--KTRLITGSYKSIKVFIVR 194
           C++ + + L+ Y RE+ KKL +S+ +    T  K RL    Y++ K   VR
Sbjct: 613 CTSSLLDPLEVYGREDEKKLIISSLLDGCLTFKKRRLKEHEYETCKAGAVR 663


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,248
Number of Sequences: 37544
Number of extensions: 253058
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)