Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120945.seq
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_563| Best HMM Match : Ank (HMM E-Value=0)                           29   3.0  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_38741| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)            28   7.0  
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 27   9.2  

>SB_563| Best HMM Match : Ank (HMM E-Value=0)
          Length = 753

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 108 VFSQFLFNLTFVRKFTFFGIHEVMNVYFDRTINTFI 215
           ++S ++  + F+RKF  FGI+ VM   F   +NTF+
Sbjct: 697 IWSAWMSLVLFIRKFPLFGIYVVM---FTDILNTFL 729


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 280 ALSTQVSTAETKTRLITGSYKSIKVFIVRSK 188
           ALS+  ST +TK   +T S   I  FI++SK
Sbjct: 483 ALSSIFSTEKTKDASVTSSLMKIGTFIIKSK 513


>SB_38741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 358 VRR*GSCSNCIQNWLKFYARENVKKLALSTQVSTAETKTRLITGSY 221
           V R  S +N  Q+W  + A  N + + +   +ST  T T  +TG +
Sbjct: 17  VNRQDSATNGAQSWSDYKAGYNRRGVEVMPNISTTNTPTGDLTGKF 62


>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
          Length = 284

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 354 RTYANYPIPYKYTLTFTL--SRTLKNSH*AHSLNCI 455
           RT   Y IPY+Y + +TL    TL+ +H  ++ + +
Sbjct: 126 RTQCTYRIPYRYHIRYTLHVRHTLRTTHTTYATHTV 161


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 329  AVGTASLATNVRKLSHSIQIYANFYAIENVKKLALSPFI 445
            A GTA  A NVR+LSH     +    +E+    +L+P++
Sbjct: 2017 APGTAVTAANVRRLSHEALQISQGAMVEDDGDQSLAPYL 2055


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,354,177
Number of Sequences: 59808
Number of extensions: 328747
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)