Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120945.seq
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   9.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   9.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 339 VPTAYKIGLNFTLEKTLRNSH 277
           V T+YK GLN   EK    SH
Sbjct: 441 VHTSYKSGLNLEQEKKDSISH 461


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 520 IRTEGSKIIFFHLVGA 567
           ++T+G KI++FH + +
Sbjct: 247 LQTDGYKILYFHAMSS 262


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 401 YAIENVKKLALSPFIELYYHFKFL 472
           Y   N KKL  + + +LYY+  ++
Sbjct: 91  YNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 401 YAIENVKKLALSPFIELYYHFKFL 472
           Y   N KKL  + + +LYY+  ++
Sbjct: 91  YNNNNYKKLYCNNYKKLYYNINYI 114


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 401 YAIENVKKLALSPFIELYYHFKFL 472
           Y   N KKL  + + +LYY+  ++
Sbjct: 91  YNNNNYKKLYCNNYRKLYYNINYI 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,659
Number of Sequences: 438
Number of extensions: 3592
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)