Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120945.seq
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR ...    31   0.61 
At3g03320.1 68416.m00330 expressed protein similar to hypothetic...    30   1.1  
At4g32820.1 68417.m04668 expressed protein ; expression supporte...    28   4.3  
At1g15800.1 68414.m01896 expressed protein                             28   4.3  
At1g66930.1 68414.m07606 serine/threonine protein kinase family ...    28   5.7  
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ...    27   7.5  

>At1g58410.1 68414.m06645 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 899

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 616 NFNQLINNHRPTSNTRTLLPSGKILFSIP 530
           NF Q+++NH PTSN +TL  S + +   P
Sbjct: 509 NFLQIVSNHSPTSNPQTLGASRRFVLHNP 537


>At3g03320.1 68416.m00330 expressed protein similar to hypothetical
           protein GB:BAA29429 [Pyrococcus horikoshii]
          Length = 244

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +2

Query: 269 CA*CEFLNVFSSVKFKPILYAVGTASLATNVRKLSHSIQIYANFYAIE 412
           C   E  +V     F  +L   G A +   V  +   +Q+Y NFY+ E
Sbjct: 149 CLLLEVQDVHRYTSFSEMLKVEGLAKVLPGVESIEEGVQVYRNFYSEE 196


>At4g32820.1 68417.m04668 expressed protein ; expression supported by
            MPSS
          Length = 1817

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 367  FAYVRR*GSCSNCIQNWLKFYARENVKKLALSTQVSTAETKTRLITGSYKSIK 209
            +AY    G C +  Q  +  Y  EN KKL ++      E     I+GS+ SI+
Sbjct: 1735 WAYTLFHGHCGSISQ--VVKYMEENTKKLFVTIAAKNEERSLNFISGSFGSIR 1785


>At1g15800.1 68414.m01896 expressed protein
          Length = 251

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 257 GGNEDSTDYWFIQINKSIYSPVKIDIHHFMNSE 159
           GG     D WF+++    + PVK+  HH  N E
Sbjct: 119 GGQVSRHDAWFLKLFAE-FKPVKLPSHHRFNDE 150


>At1g66930.1 68414.m07606 serine/threonine protein kinase family
           protein contains Pfam PF00069: Protein kinase domain
          Length = 674

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 30  SEHKPVWLIVQVDPKDWGDLARVESGVFSQFLFNLTFVRKFTFFGIHEVMNVYFDR-TIN 206
           S + P W+   ++  D GDL  +E G+ S+        +K T  G+  + +   DR  +N
Sbjct: 560 SMYFPEWIYKDLEKADNGDLEHIEIGISSE---EEEIAKKMTLVGLWCIQSSPSDRPPMN 616

Query: 207 TFIDLYE 227
             +++ E
Sbjct: 617 KVVEMME 623


>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
           identical to cDNA GATA transcription factor 2 GI:2959731
          Length = 264

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 142 TNVKLNRNCENTPDSTRARSPQSFGSTWT 56
           T+VK   +    P S R+R+P  F  TW+
Sbjct: 103 TSVKTETSFPGKPRSKRSRAPAPFAGTWS 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,213,817
Number of Sequences: 28952
Number of extensions: 227488
Number of successful extensions: 495
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)