Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120944.seq
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    29   0.40 
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   0.71 
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    28   1.2  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   2.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.8  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   3.8  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   6.6  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   8.7  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    25   8.7  

>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 195 FSTFPSDDELYCARFTITPLTPD 127
           FSTF  DD  Y +RF+  P+ P+
Sbjct: 187 FSTFTIDDSRYLSRFSFPPMMPE 209


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 546 IDMTKCIYCGLCQEACPVDAI 608
           I  T CI CG+C + CP  AI
Sbjct: 50  ISETLCIGCGICVKKCPFGAI 70


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 138 LTPDARTRDETENIFAKDIFSLN*VVSLELTEFINTSRRPTRL 10
           LTP+A +  E E   +KDI + N ++ L +    + SR P  +
Sbjct: 597 LTPEATSEIEREKNESKDISTFNIILDLPVIREFDDSRPPAHI 639


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 352 ATINYPFEKGPLSPRFRGEHALRRYPS 432
           +T  +P+ KG    RF   H+L R PS
Sbjct: 85  STSPFPYLKGSFDDRFSSTHSLTRQPS 111


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 170 SSSEGNVEKVYPQNIPGYKYVNAEEQDMFSGLCQI 274
           S+S  NV+++ PQN  G K  + EE+     L +I
Sbjct: 96  SNSLDNVQEINPQNTIGDKSAHTEEESSNDNLVKI 130


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 383 HCRLGSEVNMLYVATLQEKKGALLVSCA 466
           H + G E+       LQ K+G  L+ CA
Sbjct: 513 HAKTGEELTSAIKVALQNKEGPTLIECA 540


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 141 PLTPDARTRDETENIFAKDIFSLN*VVSLELT 46
           PLTP     +ET  I  KD   L  +VS+ +T
Sbjct: 336 PLTPGWSAHEETNRISPKDANVLPSIVSIPIT 367


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 255 NMSCSSAFTYLYPGMFCG*TFSTFPSDDELYCARFTITPLTPDA 124
           N+  S+   Y YP + C  T+    S+D ++     +T L PD+
Sbjct: 609 NVFSSTPSQYRYPILKCIQTWIFISSNDTIHSVYKKVTDLLPDS 652


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 504 EDVRTVRGRTTRYDID-MTKCIYCGLCQEACP 596
           +D    + R  R  +D + +CI C  C  +CP
Sbjct: 145 KDKEFYQSRADRAKLDGLYECILCACCSTSCP 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,317
Number of Sequences: 5004
Number of extensions: 46442
Number of successful extensions: 100
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)