Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120944.seq
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 87 1e-17
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 30 1.3
08_02_1076 - 24151334-24152241,24152334-24152610 30 1.7
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 29 2.2
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591... 29 2.9
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 28 5.1
03_05_0503 - 24952770-24953846,24953961-24954641,24954730-249548... 28 5.1
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 27 8.9
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 87.0 bits (206), Expect = 1e-17
Identities = 36/37 (97%), Positives = 37/37 (100%)
Frame = +1
Query: 358 INYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 468
INYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCE
Sbjct: 78 INYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCE 114
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/46 (78%), Positives = 37/46 (80%)
Frame = +3
Query: 471 ICXAQXITIEAEDVRTVRGRTTRYDIDMTKCIYCGLCQEACPVDAI 608
IC AQ ITIEAE+ RTTRYDIDMTKCIYCG CQEACPVDAI
Sbjct: 116 ICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 161
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 537 RYDIDMTKCIYCGLCQEACPVDAI 608
RY +CI C LC+ CP AI
Sbjct: 99 RYPTGEERCIACKLCEAICPAQAI 122
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 561 CIYCGLCQEACPVDAIR 611
CI CG+C + CP DAI+
Sbjct: 59 CIGCGICVKVCPFDAIQ 75
>08_02_1076 - 24151334-24152241,24152334-24152610
Length = 394
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 473 NXSHSLQAMHLSSPEG*RRRACSPLNRGDSGPFSN 369
N H+L A+HLS+P RR C PL S P+ +
Sbjct: 81 NSHHALLAVHLSAPR--RRPPCPPLPGSPSFPYEH 113
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 561 CIYCGLCQEACPVDAI 608
CI CG+C + CP DAI
Sbjct: 55 CIGCGICVKKCPFDAI 70
>07_01_0770 +
5912412-5912476,5913759-5913779,5914015-5914638,
5915264-5915439,5915526-5916124
Length = 494
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = -2
Query: 144 TPLTPDARTRDETENIFAKDIFSLN*VVSLELTEFINTSRRPTRLLVP 1
+PLTP + TR + +I AK+IF + VSL L + R L+P
Sbjct: 13 SPLTPSSTTRFMSRDIRAKNIFGFS--VSLILINLASIMERADENLLP 58
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 392 LGSEVNMLYVATLQEKKGALLVSCAXHLXSTG-YHD 496
+GS + ++ +T + + LL+S HL STG YHD
Sbjct: 605 IGSTIGVVPDSTEENSRVGLLLSVKPHLDSTGTYHD 640
>03_05_0503 -
24952770-24953846,24953961-24954641,24954730-24954882,
24955041-24955043
Length = 637
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 158 AQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMFSGLCQIEQLRQCSGLS 304
A Y+S++E N+E + P ++P +A + G+ ++ ++ S S
Sbjct: 22 ADYASAAEENIEIILPLSVPNGSAESAPSLHLTLGMVELRAFQETSDAS 70
>08_01_0087 +
630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 233 SHIYIQVCSVGKPSQHFLLMMS 168
+H+Y++ G P HFLL+MS
Sbjct: 736 AHVYVEFQKRGLPHAHFLLIMS 757
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,261,640
Number of Sequences: 37544
Number of extensions: 291065
Number of successful extensions: 544
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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