Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120944.seq
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)                    29   3.0  
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_1026| Best HMM Match : PDZ (HMM E-Value=9.7e-08)
          Length = 924

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 206 QNIPGYKYVNAEEQDMFSGLCQIEQLRQCSGLS 304
           +N  G  +++AEE D F   CQ+ ++R  S  S
Sbjct: 187 RNAWGLNFISAEEADRFMQFCQVARVRSWSSSS 219


>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 587 FLTEPTIDTLCH-VNIVSSGSPSNRPYVFCFN-RDXLCXTN 471
           FL    +D + + +   + G+PSNR Y+FC    D LC  N
Sbjct: 3   FLVATPLDVVKNRLQAQAKGTPSNRCYIFCNGLMDHLCLCN 43


>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 561 CIYCGLCQEACPVDAI 608
           CI CG+C + CP +AI
Sbjct: 63  CIGCGICAKKCPFEAI 78


>SB_3798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 359 STIHLRKGHCRLGSEVNMLYVATLQEKKGALLVSCAXH 472
           S   LR   C+LG  + + Y+ + +E      V C+ H
Sbjct: 153 SLCRLRVATCKLGKTIGVAYLGSCKEGSDCSTVKCSRH 190


>SB_50789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 362 LIVAGSLKI*AKVTANPRANSVQNIV*AALSDIALKTCLVPL 237
           +I  G+L I   V  NPR  S+ N++  ALS   L T  + L
Sbjct: 146 VIFVGNLLICIVVYRNPRMRSITNMLVVALSTTDLLTACITL 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,233,496
Number of Sequences: 59808
Number of extensions: 352288
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)