Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120944.seq
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical pr...   117   6e-27
AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH oxidored...   117   6e-27
U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated io...    31   0.49 
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    31   0.49 

>U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical
           protein T20H4.5 protein.
          Length = 212

 Score =  117 bits (282), Expect = 6e-27
 Identities = 51/60 (85%), Positives = 54/60 (90%)
 Frame = +1

Query: 289 MFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 468
           +F+TEL RGF V L H+F EPATINYPFEKGPLS RFRGEHALRRYPSGEERCIACKLCE
Sbjct: 61  VFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERCIACKLCE 120



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 37/46 (80%), Positives = 37/46 (80%)
 Frame = +3

Query: 471 ICXAQXITIEAEDVRTVRGRTTRYDIDMTKCIYCGLCQEACPVDAI 608
           IC AQ ITIEAE       RTTRYDIDMTKCIYCGLCQEACPVDAI
Sbjct: 122 ICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 537 RYDIDMTKCIYCGLCQEACPVDAI 608
           RY     +CI C LC+  CP  AI
Sbjct: 105 RYPSGEERCIACKLCEAICPAQAI 128


>AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH
           oxidoreductase complex I 23.8kDa subunit protein.
          Length = 212

 Score =  117 bits (282), Expect = 6e-27
 Identities = 51/60 (85%), Positives = 54/60 (90%)
 Frame = +1

Query: 289 MFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 468
           +F+TEL RGF V L H+F EPATINYPFEKGPLS RFRGEHALRRYPSGEERCIACKLCE
Sbjct: 61  VFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERCIACKLCE 120



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 37/46 (80%), Positives = 37/46 (80%)
 Frame = +3

Query: 471 ICXAQXITIEAEDVRTVRGRTTRYDIDMTKCIYCGLCQEACPVDAI 608
           IC AQ ITIEAE       RTTRYDIDMTKCIYCGLCQEACPVDAI
Sbjct: 122 ICPAQAITIEAETRPDGSRRTTRYDIDMTKCIYCGLCQEACPVDAI 167



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 537 RYDIDMTKCIYCGLCQEACPVDAI 608
           RY     +CI C LC+  CP  AI
Sbjct: 105 RYPSGEERCIACKLCEAICPAQAI 128


>U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated ion
           channel protein 3 protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 294 EHCLSCSI*HSPENMSCSSAFTYLYPGMF---CG*TFSTFPSDDELY 163
           EH +      SP  +S +   TY YP ++   C    +TFP DD++Y
Sbjct: 159 EHKMLLEAVRSPIKVSYTGEVTYAYPAIYTVLCQIGIATFPFDDQVY 205


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 519 VRGRTTRYDIDMTKCIYCGLCQEACPVDAIR 611
           V   +T   I    CI CG+C + CP DAI+
Sbjct: 52  VEATSTISQISEILCIGCGICVKKCPYDAIK 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,407
Number of Sequences: 27780
Number of extensions: 271287
Number of successful extensions: 529
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)