Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120944.seq
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s...   111   4e-25
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s...   111   4e-25
At4g19210.1 68417.m02834 RNase L inhibitor protein, putative sim...    28   4.3  
At3g13640.1 68416.m01718 RNase L inhibitor protein, putative sim...    28   4.3  
At3g13062.2 68416.m01631 expressed protein weak similarity to SP...    28   5.7  
At4g00700.1 68417.m00096 C2 domain-containing protein contains I...    27   9.9  
At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putativ...    27   9.9  

>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial (TYKY) identical to SP|Q42599
           NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}
          Length = 222

 Score =  111 bits (267), Expect = 4e-25
 Identities = 47/66 (71%), Positives = 55/66 (83%)
 Frame = +1

Query: 271 DRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 450
           +R+  T+F TE+ RG ++TL + F    TINYPFEKGPLSPRFRGEHALRRYP+GEERCI
Sbjct: 65  ERSINTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCI 124

Query: 451 ACKLCE 468
           ACKLCE
Sbjct: 125 ACKLCE 130



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 35/46 (76%), Positives = 37/46 (80%)
 Frame = +3

Query: 471 ICXAQXITIEAEDVRTVRGRTTRYDIDMTKCIYCGLCQEACPVDAI 608
           +C AQ ITIEAE+      RTTRYDIDMTKCIYCG CQEACPVDAI
Sbjct: 132 VCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 537 RYDIDMTKCIYCGLCQEACPVDAI 608
           RY     +CI C LC+  CP  AI
Sbjct: 115 RYPTGEERCIACKLCEAVCPAQAI 138


>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial, putative very strong similarity
           to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (EC 1.6.5.3) (EC
           1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
           (CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
           profile PF00037: iron-sulfur cluster-binding protein
          Length = 222

 Score =  111 bits (267), Expect = 4e-25
 Identities = 47/66 (71%), Positives = 55/66 (83%)
 Frame = +1

Query: 271 DRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 450
           +R+  T+F TE+ RG ++TL + F    TINYPFEKGPLSPRFRGEHALRRYP+GEERCI
Sbjct: 65  ERSMNTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCI 124

Query: 451 ACKLCE 468
           ACKLCE
Sbjct: 125 ACKLCE 130



 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 35/46 (76%), Positives = 37/46 (80%)
 Frame = +3

Query: 471 ICXAQXITIEAEDVRTVRGRTTRYDIDMTKCIYCGLCQEACPVDAI 608
           +C AQ ITIEAE+      RTTRYDIDMTKCIYCG CQEACPVDAI
Sbjct: 132 VCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 177



 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 537 RYDIDMTKCIYCGLCQEACPVDAI 608
           RY     +CI C LC+  CP  AI
Sbjct: 115 RYPTGEERCIACKLCEAVCPAQAI 138


>At4g19210.1 68417.m02834 RNase L inhibitor protein, putative
           similar to 68 kDa protein HP68 GI:16755057 from
           [Triticum aestivum]
          Length = 605

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 561 CIYCGLCQEACPVDAIR 611
           CI CG+C + CP +AI+
Sbjct: 55  CIGCGICVKKCPFEAIQ 71


>At3g13640.1 68416.m01718 RNase L inhibitor protein, putative
           similar to 68 kDa protein HP68 GI:16755057 from
           [Triticum aestivum]
          Length = 603

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 561 CIYCGLCQEACPVDAIR 611
           CI CG+C + CP +AI+
Sbjct: 55  CIGCGICVKKCPFEAIQ 71


>At3g13062.2 68416.m01631 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 440

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 365 IHLRKGHCRLGSEVNMLYVATLQEKKGALLVSCAXHLXSTG 487
           I L +GH  LG++V + Y  +   K+GA L   + +   +G
Sbjct: 365 ICLSRGHSALGAKVALAYFLSKMRKRGAQLSQTSQNAVGSG 405


>At4g00700.1 68417.m00096 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1006

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 346 EPATINYPFEKGPLSPRFRGEHALR 420
           E A  NYP EK  +  R RGE  LR
Sbjct: 102 EAAPFNYPLEKRSVFSRARGELCLR 126


>At1g03475.1 68414.m00329 coproporphyrinogen III oxidase, putative /
           coproporphyrinogenase, putative / coprogen oxidase,
           putative similar to coproporphyrinogen III oxidase,
           chloroplast [precursor] from Glycine max [SP|P35055],
           Nicotiana tabacum [SP|Q42946], Hordeum vulgare
           [SP|Q42840], ESTs gb|AA586260 and dbj|D48620; contains
           Pfam domain coproporphyrinogen III oxidase, aerobic
           [PF01218]
          Length = 362

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/67 (20%), Positives = 29/67 (43%)
 Frame = -3

Query: 578 EPTIDTLCHVNIVSSGSPSNRPYVFCFNRDXLCXTNXSHSLQAMHLSSPEG*RRRACSPL 399
           +P +   C V+I      + RP+ F  + D +  ++ S S++A   +     +   C  +
Sbjct: 40  KPNLALRCSVSIEKEVPETERPFTFLRDSDDVTPSSSSSSVRARFETMIRAAQDSVCDAI 99

Query: 398 NRGDSGP 378
              + GP
Sbjct: 100 EAIEGGP 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,460,996
Number of Sequences: 28952
Number of extensions: 239439
Number of successful extensions: 439
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)