Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120924.seq
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    27   0.14 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   6.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   9.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   9.0  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 314 TDMYLYKEQNETITNFVKKIL-DISGPDLGCRKLMRIYLNTDTFSGQLPAY 463
           T+M L K+ +E    F  KIL  + G + G  K MR    T       P+Y
Sbjct: 88  TEMLLKKDSSEAFNEFRTKILAQVHGTNNGTNKNMRRLSTTTQNKNDDPSY 138


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 304 DTRIVRFRRQVGKQ 263
           DTR VR R +VGK+
Sbjct: 8   DTRTVRLRNRVGKR 21


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 NDQLMCLLKDIFTNKFDYKIKRRLNH 254
           ND+++ +L+DI+++  D      L H
Sbjct: 342 NDEVLQVLEDIYSDLLDLTDNNELFH 367


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 419 IYLNTDTFSGQLPAYLTHYVN 481
           ++   + FSG+LP +L  + N
Sbjct: 462 VFAVINVFSGELPVFLQEHRN 482


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 419 IYLNTDTFSGQLPAYLTHYVN 481
           ++   + FSG+LP +L  + N
Sbjct: 462 VFAVINVFSGELPVFLQEHRN 482


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,854
Number of Sequences: 336
Number of extensions: 3329
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)