Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120924.seq
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.45
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 27 1.8
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 27 2.4
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 3.2
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 26 5.5
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 25 7.3
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.3
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 25 7.3
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 9.7
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.5 bits (63), Expect = 0.45
Identities = 22/101 (21%), Positives = 45/101 (44%)
Frame = +2
Query: 248 QSFKRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKILDISGPDLGCRKLMRIYL 427
++FK L +SC + + + K Q+ +++ +K+ S + C+ LM
Sbjct: 3791 RTFKELAETSSFIEMSSCFSKVLRAFNLKFQSMKLSSLKEKLRSSSVDKMSCQLLMLFLP 3850
Query: 428 NTDTFSGQLPAYLTHYVNYPHKNLCDQIGSGLCHVFFRYTN 550
+ F + L +++N + NL D + S + +FF N
Sbjct: 3851 VCEQFINLAESVLDYFINVHNSNL-DSL-SKISTLFFMVAN 3889
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 272 NLPAESYNSCVNDLTDMYLYKEQNETITNF 361
N+P +S+ S VN L + Y KE + T+F
Sbjct: 670 NMPVKSFFSTVNQLEETYEKKELKDISTSF 699
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 542 NEKIHDINRFQFGHTNFCVDSLR 474
N ++DI +F++GH FC +R
Sbjct: 125 NPCLYDIEKFEYGHEIFCTFGVR 147
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 317 DMYLYKEQN-ETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPA 460
D +YK Q+ T+ N +K+ +I+ D R+++RI+ N ++G PA
Sbjct: 223 DSLVYKPQDLRTLKNMIKEG-NITEVDELYREVLRIFANCKMYNGSDPA 270
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 302 VNDLTDMYLYKEQNETITNFVKKILDISGP 391
+N L D L+ N++ N++ +LD SGP
Sbjct: 204 LNYLKDKILFAPDNQSAWNYLCGVLDKSGP 233
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 326 LYKEQNETITNFVKKILDISGPDLGC 403
LYK Q + NF+++ DIS ++ C
Sbjct: 558 LYKFQKDIAFNFLERTSDISAYEIAC 583
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 257 KRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKI-LDISG 388
+RL + PA+ Y +C+ +L D+Y + E + V+K L +SG
Sbjct: 65 ERLASENPAD-YVACIEELLDIYPMQGGREYLETLVEKYNLHMSG 108
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 202 RTFSPTSLIIKLNADSIIQALVCQP 276
R F PTSLI L +I L C P
Sbjct: 167 RLFPPTSLIALLELPPVIHPLSCVP 191
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 351 MVSFCSLYKYMSVRSLTH 298
+VSF LY Y SV+ L H
Sbjct: 323 LVSFAHLYSYTSVKCLVH 340
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 519 VYVMYFFVILIKQHNFLTI 575
+YV+YFF LI++H+ L +
Sbjct: 502 IYVIYFFGHLIRKHSRLAV 520
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,645,110
Number of Sequences: 5004
Number of extensions: 54055
Number of successful extensions: 156
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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