Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120924.seq
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825 35 0.066
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 33 0.27
12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332 31 0.61
10_01_0316 + 3479574-3482679,3482766-3483127 31 0.81
10_01_0105 + 1287423-1289924 31 0.81
04_04_0881 + 29055724-29059197 30 1.4
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352... 30 1.9
10_01_0102 - 1244294-1245478 30 1.9
05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,415... 30 1.9
03_02_0132 - 5808606-5808696,5808804-5808875,5809133-5809204,580... 30 1.9
02_05_0061 + 25506648-25509399,25509564-25509901,25510392-255105... 30 1.9
02_02_0419 - 10009686-10012568 29 2.5
07_03_0008 + 12303536-12303893,12303910-12304176,12304635-123049... 29 3.3
11_08_0033 + 27820563-27823482,27823593-27823996 29 4.3
10_08_0331 - 16831646-16834756 29 4.3
02_02_0025 + 6183328-6186127,6186265-6186623 29 4.3
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 28 5.7
07_01_0113 + 840866-841574,841687-842210,842391-842840,843541-84... 28 5.7
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 28 5.7
02_01_0705 - 5259949-5263887,5266207-5266509 28 5.7
01_06_0355 + 28657833-28660665,28660762-28661126 28 5.7
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 28 7.6
10_01_0318 + 3493913-3496976,3497064-3497392 28 7.6
02_05_1280 - 35434165-35434392,35434639-35434800,35435241-354353... 28 7.6
01_01_0490 + 3620523-3623403,3623524-3623996 28 7.6
>03_02_0824 + 11556128-11556989,11557515-11559134,11559236-11559825
Length = 1023
Score = 34.7 bits (76), Expect = 0.066
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 338 QNETITNFVKKILDISGPDLGCRKLMRIY-LNTDTFSGQLPAYLTHYVNYPHKNL 499
QN +++N K++ + DLG +++ L+ + FSGQ+PA LT N H NL
Sbjct: 79 QNLSLSN--NKLVGVLPRDLGSMTSLQLLDLSNNMFSGQIPAELTKLANLGHLNL 131
>11_06_0115 +
20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 32.7 bits (71), Expect = 0.27
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +2
Query: 368 KILDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSGLCHVFFRYT 547
KILDI + GC++LM + L+ F G+LP+++ + L + + SG H+ T
Sbjct: 182 KILDIW--NTGCKQLMHLDLSQSKFHGRLPSWIGDFPAVRSLILNNNVLSG--HIPINIT 237
Query: 548 NKTT----QLSNNTF 580
N T LS N F
Sbjct: 238 NLTNLQDLDLSQNKF 252
>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
Length = 524
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +2
Query: 263 LFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKILDISGPDLGCRKLMRIYLNTDTF 442
LF + + N + L +Y+ E+ E + +KK+ ++ GP C+ R++ F
Sbjct: 401 LFWIVELDMTNKVLRSLPTLYIQVEEEEEDDDEIKKVQEVQGPS-RCKAYKRVFHGEYFF 459
Query: 443 SGQLPAYL 466
+YL
Sbjct: 460 PSHFTSYL 467
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 401 CRKLMRIYLNTDTFSGQLPAYL 466
CR L+ +YLN++ F+G +PA++
Sbjct: 334 CRCLIMLYLNSNNFTGSIPAFI 355
>10_01_0105 + 1287423-1289924
Length = 833
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 419 IYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSGLCHVFFRYTNKTT 559
++L + F+G +P +TH + NL D SGL + + N+ T
Sbjct: 550 LHLGHNMFNGDIPVNITHLTQLQYLNLADNNISGLIPLSLSHFNEMT 596
>04_04_0881 + 29055724-29059197
Length = 1157
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 398 GCRKLMRIYLNTDTFSGQLPAYL 466
G R+L +YL ++FSGQ+PA L
Sbjct: 414 GLRRLREVYLGGNSFSGQIPASL 436
>11_01_0456 +
3522599-3523921,3524005-3524027,3524097-3525265,
3525373-3525737
Length = 959
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 365 KKILDISGPDLGCRKLMR-IYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSGLCHVFFR 541
++++ + P LG ++ +YL+T++F+G++P L H + + L + G F
Sbjct: 84 QRLVGVISPSLGNLTFLKFLYLDTNSFTGEIPLSLGHLHHLQNLYLSNNTLQGKIPDFTN 143
Query: 542 YTNKTTQLSNNTFI 583
+N L N +
Sbjct: 144 SSNLKVLLLNGNHL 157
>10_01_0102 - 1244294-1245478
Length = 394
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 296 SCVNDLTDMY-LYKEQNETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTH 472
SC+++LT M LY QN+ IT + K + + L + L +TFSG++P L +
Sbjct: 237 SCLSNLTKMKELYLHQNQ-ITGSIPKEIGMLA------NLQLLSLGNNTFSGEIPTTLAN 289
Query: 473 YVN 481
N
Sbjct: 290 LTN 292
>05_01_0498 + 4152729-4152820,4153316-4153425,4153840-4153877,
4154335-4154433,4154461-4157475
Length = 1117
Score = 29.9 bits (64), Expect = 1.9
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Frame = +2
Query: 248 QSFKRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFV-KKILDISGPDLGCRKLMRIY 424
+SF RL YN+ + +++ +N T+ NF + P LG L +
Sbjct: 660 ESFGRLAELSVVTLYNNSLEGALPESMFELKNLTVINFSHNRFTGAVVPLLGSSSLTVLA 719
Query: 425 LNTDTFSGQLPAYLTHYVNYPHKNLC-DQIGSGLCHVFFRYTN-KTTQLSNNTF 580
L ++FSG +PA + L +++ + T K LSNN F
Sbjct: 720 LTNNSFSGVIPAAVARSTGMVRLQLAGNRLAGAIPAELGDLTELKILDLSNNNF 773
>03_02_0132 -
5808606-5808696,5808804-5808875,5809133-5809204,
5809299-5809379,5809475-5809618,5809708-5809779,
5810027-5810140,5810684-5810755,5811462-5811609,
5812120-5812231
Length = 325
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 368 KILDISGPDLG-CRKLMRIYLNTDTFSGQLPAYLTH 472
K+ D+ P++G +KL +YL+ + F G++P L +
Sbjct: 155 KLQDVLPPEIGELKKLTHLYLSFNNFKGEIPVELAN 190
>02_05_0061 +
25506648-25509399,25509564-25509901,25510392-25510593,
25510779-25510854,25512036-25512294
Length = 1208
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 326 LYKEQNETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCD 505
LY + N I N ++ G ++ + L+++ FSGQ+P + H++ NL
Sbjct: 573 LYLQNNSFIGNIPSSFSEMKGLEI-------LDLSSNNFSGQIPKFFGHFLTLYDLNLSY 625
Query: 506 QIGSGLCHVFFRYTNKT 556
G VF + N T
Sbjct: 626 NNFDGEVPVFGVFANAT 642
>02_02_0419 - 10009686-10012568
Length = 960
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 341 NETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSG 520
N +T + + +IS LG L+ + L + F+G+ P +L H + +L + SG
Sbjct: 594 NNNLTGHLPRCRNISSDGLG---LITLILYRNNFTGEFPVFLKHCKSMTFLDLAQNMFSG 650
Query: 521 L 523
+
Sbjct: 651 I 651
>07_03_0008 +
12303536-12303893,12303910-12304176,12304635-12304951,
12304975-12305819,12305859-12306069
Length = 665
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +3
Query: 117 NFSLLGNEYHVLVSSLQRVLNDQLMCLLKDIFTNKFDYKIKRRLNHSSACLPTCRRNRT 293
NF L EYH+ L L C + F+N F KR S LP C++ RT
Sbjct: 327 NFRLFCKEYHLSWKDLSLHLGFDKTCKVN--FSNAFPNFNKRMFWQSILGLPFCKKPRT 383
>11_08_0033 + 27820563-27823482,27823593-27823996
Length = 1107
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 410 LMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSGLCHVFFRYTNKTT--QLSNNTF 580
L+ + L + +G LP+ L+H+ N H ++ D + G + Y T LS+N+F
Sbjct: 595 LILLLLFNNALTGALPSDLSHFQNIDHIDVSDNMLDGQLPNSYAYHPMLTYLNLSHNSF 653
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Frame = +2
Query: 335 EQNETITNFVKKILDISGPDLG-CRKLMRIYLNTDTFSGQLPA---------YLTHYVNY 484
+Q + F + + P++G L R+ +NT+ G+LPA YL+ + NY
Sbjct: 461 KQLTALALFFNDLTGVIPPEIGNMTALQRLDVNTNRLQGELPATISSLRNLQYLSVFNNY 520
Query: 485 PHKNLCDQIGSGLCHVFFRYTNKT 556
+ +G G+ +TN +
Sbjct: 521 MSGTIPPDLGKGIALQHVSFTNNS 544
>02_02_0025 + 6183328-6186127,6186265-6186623
Length = 1052
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +2
Query: 407 KLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLC-DQIGSGLCHVFFRYT--NKTTQLSNNT 577
KL +YL+ + FSG +PA L + + NL + G + F + +++ LS+N+
Sbjct: 488 KLTELYLDGNNFSGTIPASLGQWRHLEKLNLSHNSFGGSIPSEVFNISSLSQSLDLSHNS 547
Query: 578 F 580
F
Sbjct: 548 F 548
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +2
Query: 302 VNDLTDMYLYKEQNETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPAYL 466
+N LT++ + + + NF+ + + CRKL + +N++ F+G LP YL
Sbjct: 415 MNSLTELIISENGLQGDLNFLSAVSN-------CRKLSVLCINSNRFTGILPDYL 462
>07_01_0113 +
840866-841574,841687-842210,842391-842840,843541-843699
Length = 613
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 404 RKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSG 520
R L + L+ +TFSG +PA +T+ ++ + +L D SG
Sbjct: 340 RDLQILRLSHNTFSGSIPAGITNLLSLQYLDLSDNNISG 378
>05_06_0273 -
26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 180 RSKRVATTTPTRDIRFQEAKN 118
R R+ATT+P +++QE KN
Sbjct: 718 RPSRLATTSPAEPVKYQETKN 738
>02_01_0705 - 5259949-5263887,5266207-5266509
Length = 1413
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 374 LDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCD-QIGSGL-CHVFFRYT 547
+D + + L+R+ ++ FSG+LP + + + H +L D Q+G L +F
Sbjct: 176 VDFPSQIIAFQSLVRLNVSGCGFSGELPEAMVNLQHLQHLDLSDNQLGGPLPASLFDLKM 235
Query: 548 NKTTQLSNNTF 580
K L NN F
Sbjct: 236 LKVMVLDNNMF 246
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/70 (25%), Positives = 38/70 (54%)
Frame = +2
Query: 251 SFKRLFANLPAESYNSCVNDLTDMYLYKEQNETITNFVKKILDISGPDLGCRKLMRIYLN 430
SF L ++P + +++L Y ++N+ ++ V + D+SG C+ L + +N
Sbjct: 399 SFNSLTGSVPRPIFGPALSEL-----YIDENK-LSGDVDFMADLSG----CKSLKYLVMN 448
Query: 431 TDTFSGQLPA 460
T+ F+G +P+
Sbjct: 449 TNYFTGSIPS 458
>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 371 ILDISGPDLG-CRKLMRIYLNTDTFSGQLPAYLTH 472
++ + P LG L ++LNT+ SGQ+P L H
Sbjct: 1369 LVGLISPSLGNLTSLEHLFLNTNQLSGQIPPSLGH 1403
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 401 CRKLMRIYLNTDTFSGQLPAYL 466
CR L +YLN + F+G +P ++
Sbjct: 320 CRSLTMLYLNGNRFTGSIPKFI 341
>02_05_1280 -
35434165-35434392,35434639-35434800,35435241-35435372,
35436048-35436115,35436719-35437313
Length = 394
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 376 KYFFHKIGNGFVLFLVQIHVGEIIDTRIVRFRRQ 275
K+F +G GF ++ I GE + RI+ F +Q
Sbjct: 200 KWFLGSVGTGFTPHVIIISPGEDVAARIMSFSQQ 233
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 389 PDLG-CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNL 499
P+LG C L IYL + SG +PA L N KNL
Sbjct: 268 PELGRCTSLENIYLYENALSGSIPAQLGGLANL--KNL 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,414,600
Number of Sequences: 37544
Number of extensions: 319880
Number of successful extensions: 973
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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