Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120924.seq
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      28   5.9  
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)          28   5.9  

>SB_34562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 978

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 84  KRPFNADRCIKNFSLLGNE-YHVLVSSLQRVLN 179
           +RPF  DRC K F   G+   H+  SS  R LN
Sbjct: 563 ERPFECDRCDKRFGRSGDRARHIRKSSRIRTLN 595


>SB_20450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +3

Query: 87  RPFNADRCIKNFSLLGNEYHVLVSSLQRVLNDQLMCLLKDIF---TNKFDYKIKRRLNHS 257
           R    D  IKN   + +EY++LV  ++    D  +     IF    + F+YK    +NH+
Sbjct: 466 RDIRHDVIIKNIEQIISEYYILVLDMRDAFPDMDLANFAKIFQFAPSIFEYKC---INHN 522

Query: 258 SACLPTCRR 284
           +     CRR
Sbjct: 523 TISKHFCRR 531


>SB_9634| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 587

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 15  DNCVKITTAPLSFNVFFVNVRIMKRPFNADRCIKNF 122
           + C K    P+S N     V  ++RP+  D+C K F
Sbjct: 506 NECEKKFKHPVSLNKHVRGVHSLERPYKCDQCDKKF 541


>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
          Length = 646

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  HSPAVFQRVFCQRAHYETTLQRGPLHQKF 121
           HSP +  +++    HY   +QR P H+ F
Sbjct: 505 HSPRIPPKIYAGFVHYRAFIQRDPSHRWF 533


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,766,949
Number of Sequences: 59808
Number of extensions: 405353
Number of successful extensions: 974
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)