Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120924.seq
         (660 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC060887-1|AAH60887.1|  443|Homo sapiens chromosome 3 open readi...    33   1.2  
AJ868234-1|CAI30569.1|  527|Homo sapiens glycosyltransferase pro...    33   1.2  
X83863-1|CAA58743.1|  425|Homo sapiens prostaglandin E receptor,...    31   4.8  

>BC060887-1|AAH60887.1|  443|Homo sapiens chromosome 3 open reading
           frame 64 protein.
          Length = 443

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 344 ETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYP 487
           +T++ F  +I+D    +LG    +RI  NTD F G   A LTH +  P
Sbjct: 306 KTVSTFEVQIVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLP 353


>AJ868234-1|CAI30569.1|  527|Homo sapiens glycosyltransferase
           protein.
          Length = 527

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 344 ETITNFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYP 487
           +T++ F  +I+D    +LG    +RI  NTD F G   A LTH +  P
Sbjct: 390 KTVSTFEVQIVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLP 437


>X83863-1|CAA58743.1|  425|Homo sapiens prostaglandin E receptor,
           subtype EP3f protein.
          Length = 425

 Score = 30.7 bits (66), Expect = 4.8
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 147 VLVSSLQRVLNDQLMCLLKDIFTNKFDYKIKRRLNHSSACLPT 275
           V ++SL ++L+  +  LL+ I   KF    KRRL   +  LPT
Sbjct: 332 VRLASLNQILDPWVYLLLRKILLRKFCQMRKRRLREQAPLLPT 374


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,520,182
Number of Sequences: 237096
Number of extensions: 1758400
Number of successful extensions: 3640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3640
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)