Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120924.seq
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81526-4|CAB04267.2|  430|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    28   6.8  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z81526-4|CAB04267.2|  430|Caenorhabditis elegans Hypothetical
           protein F33H2.7 protein.
          Length = 430

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +3

Query: 213 TNKFDYKIKRRLNHSSACLPTCRRNRTIRVSMISPTCICTRNKTKPLPIL 362
           TN+ +Y  +  +++ S  LPT  R +TIR  +   TC C   K + L ++
Sbjct: 205 TNQEEYSKELTISYVSRMLPTSERRKTIR-GVHFLTCQCEMCKNEELDLI 253


>Z19157-2|CAA79568.1|  826|Caenorhabditis elegans Hypothetical
           protein ZC84.3 protein.
          Length = 826

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 260 RLFANLPAESYNSCVNDLTDMYLYKEQNETIT 355
           RLF  LPAE  N+ V+D+T   +   Q+ + T
Sbjct: 744 RLFEELPAEELNNIVDDITPTIIKAYQSTSST 775


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 258  SACLPTCRRNRTIRVSMISPTCIC 329
            S C  TC RN   R+   SPT  C
Sbjct: 1234 SECALTCHRNHDCRLKRTSPTAYC 1257


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 258  SACLPTCRRNRTIRVSMISPTCIC 329
            S C  TC RN   R+   SPT  C
Sbjct: 1234 SECALTCHRNHDCRLKRTSPTAYC 1257


>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3

Query: 15  DNCVKITTAPLSFNV 59
           DNCV+ TTAP++F++
Sbjct: 311 DNCVRSTTAPVAFSI 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,881,420
Number of Sequences: 27780
Number of extensions: 315525
Number of successful extensions: 808
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)