Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120924.seq
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +3

Query: 114 KNFSLLGNEYHVLVSSLQRVLNDQLMC---LLKDIFTNKFDYKI 236
           K  ++  NE  + +++   ++ +  +C   LL+D FT+K +Y++
Sbjct: 367 KEITVPSNEETIDINNGAELMQETHVCFFSLLRDAFTSKGEYRM 410


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 368 KILDISGPDLGCRKLMRIYLNTDTFSGQLPAY 463
           +I   + P +    L  +Y   D+F GQL  Y
Sbjct: 502 EICSTATPMMVINMLQNLYEQFDSFCGQLDVY 533


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -2

Query: 542 NEKIHDINRFQFGHTNFC 489
           N+ IH+ N +++ + N C
Sbjct: 87  NKTIHNNNNYKYNYNNNC 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,348
Number of Sequences: 438
Number of extensions: 3834
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)