Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120924.seq
(660 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17840.1 68416.m02274 leucine-rich repeat transmembrane prote... 35 0.042
At1g56145.1 68414.m06448 leucine-rich repeat family protein / pr... 31 0.90
At1g67510.1 68414.m07690 leucine-rich repeat family protein cont... 29 3.6
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote... 29 3.6
At5g61240.1 68418.m07681 leucine-rich repeat family protein cont... 28 4.8
At1g61540.1 68414.m06933 kelch repeat-containing F-box family pr... 28 4.8
At1g55610.1 68414.m06365 protein kinase family protein contains ... 28 4.8
At5g65710.1 68418.m08270 leucine-rich repeat transmembrane prote... 28 6.3
At5g51350.1 68418.m06367 leucine-rich repeat transmembrane prote... 28 6.3
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote... 28 6.3
At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote... 28 6.3
At2g25410.1 68415.m03043 hypothetical protein 27 8.4
At2g14140.1 68415.m01575 hypothetical protein similar to At2g049... 27 8.4
At1g74360.1 68414.m08615 leucine-rich repeat transmembrane prote... 27 8.4
At1g60630.1 68414.m06825 leucine-rich repeat family protein simi... 27 8.4
>At3g17840.1 68416.m02274 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
from [Petunia integrifolia]
Length = 647
Score = 35.1 bits (77), Expect = 0.042
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 392 DLG-CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSGLCHVFFRYTN--KTTQ 562
DLG C L R+YL + FSG++P L N NL + SG F+ KT
Sbjct: 114 DLGSCSDLRRLYLQGNRFSGEIPEVLFSLSNLVRLNLAENEFSGEISSGFKNLTRLKTLY 173
Query: 563 LSNN 574
L NN
Sbjct: 174 LENN 177
>At1g56145.1 68414.m06448 leucine-rich repeat family protein /
protein kinase family protein contains Pfam profiles:
PF00069: Eukaryotic protein kinase domain, multiple
PF00560: Leucine Rich Repeat
Length = 1012
Score = 30.7 bits (66), Expect = 0.90
Identities = 10/32 (31%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 389 PDLG-CRKLMRIYLNTDTFSGQLPAYLTHYVN 481
P++G C +L+++Y+ + SG++P+ ++VN
Sbjct: 184 PEIGNCTRLVKMYIGSSGLSGEIPSSFANFVN 215
>At1g67510.1 68414.m07690 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 719
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +2
Query: 389 PDLG-CRKLMRIYLNTDTFSGQLP 457
PDL C++L R+ L+ + FSG++P
Sbjct: 162 PDLNKCKQLQRLILSANNFSGEIP 185
>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GI:4105699
from [Arabidopsis thaliana]
Length = 996
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 401 CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGS 517
CR L RI L + FSG +P T + PH NL + + +
Sbjct: 395 CRSLTRIRLAYNRFSGSVP---TGFWGLPHVNLLELVNN 430
>At5g61240.1 68418.m07681 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-0B
[Lycopersicon esculentum] gi|3894387|gb|AAC78593
Length = 380
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 368 KILDISGPDLG-CRKLMRIYLNTDTFSGQLPAYL 466
K+ D+ P++G ++L +YL+ ++F G++P L
Sbjct: 186 KLQDVIPPEIGELKRLTHLYLSFNSFKGEIPKEL 219
>At1g61540.1 68414.m06933 kelch repeat-containing F-box family
protein low similarity to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 402
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +3
Query: 72 VRIMKRPFNADRCIKNFSLLGNEYHVLVSSLQRVLNDQLMCLLKDIFTNKFDYKIKRRLN 251
+ IM P+ D + FSL+ Y+ +S + + + I T++ Y+I+ RLN
Sbjct: 25 ISIMSLPY--DLLLNCFSLVSRLYYPTLSLVSKTF--------RSIITSRELYEIRSRLN 74
Query: 252 HSSACLPTC 278
+ CL C
Sbjct: 75 RTDKCLYLC 83
>At1g55610.1 68414.m06365 protein kinase family protein contains
Prosite:PS00107: Protein kinases ATP-binding region
signature
Length = 1166
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +2
Query: 401 CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSG 520
C+ L+ + L+ +TFSG+LP+ T V + NL + SG
Sbjct: 301 CKTLVILDLSGNTFSGELPSQFTACVWLQNLNLGNNYLSG 340
>At5g65710.1 68418.m08270 leucine-rich repeat transmembrane protein
kinase, putative
Length = 993
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 383 SGPDLGCRKLMRIYLNTDTFSGQLPAY 463
S P C KL + LN + FSG+LP +
Sbjct: 116 SAPLSLCSKLQNLILNQNNFSGKLPEF 142
>At5g51350.1 68418.m06367 leucine-rich repeat transmembrane protein
kinase, putative
Length = 895
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 356 NFVKKILDISGPDLGCRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSG 520
NF + D +G D + L+ + +++FSG LP +L+ N NL +G
Sbjct: 137 NFSGRFPDGNGGDSSLKNLIFLDALSNSFSGPLPIHLSQLENLKVLNLAGSYFTG 191
>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00560 leucine
rich repeat, PF00069 eukaryotic protein kinase domain
Length = 1016
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 392 DLG-CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSG 520
D+G C L R+ L+++ FSG+LP L + H ++ + + SG
Sbjct: 266 DIGLCPHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSNNLLSG 309
>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor protein kinase
GI:1389566 from [Arabidopsis thaliana]
Length = 1123
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 401 CRKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQIGSG 520
C+ L I L+ + F+GQ+P L + N + NL + G
Sbjct: 529 CKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEG 568
>At2g25410.1 68415.m03043 hypothetical protein
Length = 377
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 178 FKTRCNDDTNT*YSFPRSEKFLMQ 107
F C DD NT P+SE FL++
Sbjct: 60 FNLICKDDANTTLKLPKSEPFLVK 83
>At2g14140.1 68415.m01575 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 847
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 203 LQQAH*LVVQNALQRRHQHVIFVSKKRKIFDAAVRVEGSFHNAHVDKKHVERQRG 39
++Q H + + L+ + V+ S+KRK +V+ + N V KK V R G
Sbjct: 351 VEQGHQGRIDHVLKSAIETVVHQSRKRKSMSFGEKVKLVYENCEVLKKKVGRLEG 405
>At1g74360.1 68414.m08615 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive
1 GB:AAC49810 (putative receptor protein kinase);
contains Pfam profiles: PF00560 Leucine Rich Repeat (17
repeats), PF00069 Eukaryotic protein kinase domain
Length = 1106
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +2
Query: 410 LMRIYLNTDTFSGQLPAYLTHYVNYPHKNLC-DQIGSGLCHVFFRYTN-KTTQLSNNTFI 583
L +YL +TFS +P L + N +L ++ G + +F R+T K L N+++
Sbjct: 302 LKGLYLGNNTFSRDIPETLLNLTNLVFLDLSRNKFGGDIQEIFGRFTQVKYLVLHANSYV 361
>At1g60630.1 68414.m06825 leucine-rich repeat family protein similar
to receptor kinase GI:498278 from [Petunia
integrifolia]; contains protein kinase domain,
Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 652
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 350 ITNFVKKILDISGPDL-GCRKLMRIYLNTDTFSGQLPAYLT 469
+ +F L S P+L G L +YLN + FSG+ P LT
Sbjct: 90 VLSFKGNSLSGSIPNLSGLVNLKSLYLNDNNFSGEFPESLT 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,542,055
Number of Sequences: 28952
Number of extensions: 269202
Number of successful extensions: 712
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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