Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120922.seq
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   2.3  
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    25   9.5  
SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence orphan|Sc...    25   9.5  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   9.5  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 364  IRRSHSFSGSRSWAQLYIYIVKKYGVQRLHRTTTQSHDFKYTGRLN 501
            +R   SFS  R+    Y    + YGV+R +++ + S    YTG  N
Sbjct: 870  VRAERSFSSRRNNGNSYRGGHQSYGVRRSYQSQSYSSRQSYTGVTN 915


>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 316 SHVRTLNAAFSKKPFFIRRSHS 381
           +H+R LN  F  KPFF  +  S
Sbjct: 17  AHIRELNNPFPTKPFFFLKPTS 38


>SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 99

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 479 SSIPDVLTMRVYVFYLHDLQRVLPVF 556
           S+I +V  MR Y+FY  + + +LP F
Sbjct: 32  SNIYEVEDMRYYLFYTEEEKNMLPGF 57


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 479 SSIPDVLTMRVYVFYLHDLQRVLPVF 556
           S+I +V  MR Y+FY  + + +LP F
Sbjct: 709 SNIYEVEDMRYYLFYTEEEKNMLPGF 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,131
Number of Sequences: 5004
Number of extensions: 45061
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)