Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120922.seq
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_793| Best HMM Match : GHMP_kinases (HMM E-Value=0.0037)             29   4.3  
SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_1024| Best HMM Match : Ank (HMM E-Value=0)                          28   5.7  

>SB_793| Best HMM Match : GHMP_kinases (HMM E-Value=0.0037)
          Length = 284

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 253 VPSATRVFFNGALACCLCIL*SHVRTLNAAFSK 351
           VP++  +  + AL CC C+   HV TL  + +K
Sbjct: 63  VPNSAGLSSSSALVCCSCLATLHVNTLELSKAK 95


>SB_33861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1205

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 372 SSNEKRFFTEGRIQSSDVRLQYTKTTR*GTIKKNTCGT-RNCCGK 241
           + NE +   E    SSD  LQ        T  K TCGT ++CC K
Sbjct: 66  TDNEWQEAVEHGCSSSDATLQINVFPIVSTKPKKTCGTSKSCCSK 110


>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
          Length = 891

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 350 LLKAAFRVRTCDYSIQRQHAKAPLKKTRVALGTAAVKLLHR 228
           +++A   V TCD S+Q    +APL    V   +  VK+L R
Sbjct: 148 VIRALVSVDTCDVSVQDNTYRAPLHWAAVLGNSKIVKILLR 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,601,876
Number of Sequences: 59808
Number of extensions: 335220
Number of successful extensions: 702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)