Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120922.seq
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical...    31   0.71 
Z50874-10|CAA90770.1|  302|Caenorhabditis elegans Hypothetical p...    29   3.8  

>AC024831-10|AAK72074.2|  521|Caenorhabditis elegans Hypothetical
           protein Y55F3C.3a protein.
          Length = 521

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 361 FIRRSHSFSGSRSWAQLYIYIVKKYGVQRLHRTTTQSHDFKYTGRLNY-ESLCF 519
           F+R +H     R WA  Y     +Y  +R+ R     +DF  TG+L+  + LCF
Sbjct: 96  FVRMNHEHR--RQWADWYFEEQDEYFFERVPRYFDPIYDFYATGKLHVPKDLCF 147


>Z50874-10|CAA90770.1|  302|Caenorhabditis elegans Hypothetical
           protein R10E4.11 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 569 VKIFRIRVEHVVNHEGKKHRLS*LRRPVYLKSCDCVVV 456
           V+ FR  V+ V+ HE +KH    LR+  + K  +C VV
Sbjct: 231 VRQFRT-VKEVIEHEKEKHLAKPLRKTQFFKCNECSVV 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,083,971
Number of Sequences: 27780
Number of extensions: 254318
Number of successful extensions: 526
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)