Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120922.seq
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31740.1 68415.m03876 expressed protein                             28   4.7  
At5g13670.1 68418.m01592 nodulin MtN21 family protein similar to...    27   8.2  

>At2g31740.1 68415.m03876 expressed protein
          Length = 760

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 262 ATRVFFNGALACCLCIL*SHVRTLNAAFSKKPFFIRRS-HSFSGSRSWAQLYIYIVKKYG 438
           A RV   G    CL +  SHV  L   FS+  F  + + HS +  RS  + Y+ + +K  
Sbjct: 164 AKRVLKPGGKFICLTLAESHVLAL--LFSRFRFGWKMNVHSIAQKRSKLKTYMVVAEKEN 221

Query: 439 VQRLHRTTT 465
              LH  T+
Sbjct: 222 SVLLHEITS 230


>At5g13670.1 68418.m01592 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 377

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -2

Query: 377 CDRLMKKGFLLKAAFRVRTCDYSIQRQHAKAPLKKTRVALGTA 249
           C+ L    F++   F++     +I+R+H++A L  T VA+G A
Sbjct: 105 CNALPAMTFIMACVFKLEKV--TIERRHSQAKLVGTMVAIGGA 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,956,093
Number of Sequences: 28952
Number of extensions: 222652
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)