Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120921.seq
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    28   1.4  
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    27   2.4  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   5.5  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    25   7.2  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    25   9.5  

>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 432 DHLLSIHSPLXNRWNYIQKXPEQ 364
           DHL SI S + N WN +Q  P +
Sbjct: 261 DHLKSIQSEVSNLWNKLQVSPNE 283


>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 276 YEPPTADIYTQQSYSAPSSYQDGGXSA 356
           Y PP  + Y QQ Y+ P  Y  GG  A
Sbjct: 26  YYPPQQN-YPQQGYAPPQGYPQGGYPA 51


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 329 LISRWWXLCTGSCSGXFWI*FQRLXSGLWILNRW 430
           LI+ WW  C    S  FWI    +  GL+  N W
Sbjct: 341 LITPWWATCCIFTSFVFWIWI--VLPGLYYQNYW 372


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 215 LLDIHLLNQMDMYLTHWISAI*ATNC*YLYTTII 316
           ++DI LL+Q       W+S++   +C YL+  +I
Sbjct: 333 IVDIILLHQSHSTSKEWLSSLEQYHCTYLFRDVI 366


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 289 LLIFIHNNHTVHQAHIKMVVTLHRQLLRXLLD 384
           LL+F H N  +H+ HI     + RQL R   D
Sbjct: 84  LLVF-HANQVIHKTHILDATEIFRQLGRHKRD 114


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 267 YQPYEPPTADIYTQQSYSAPSSYQDGGXSAP 359
           YQ    PT       +YSAP S+     SAP
Sbjct: 129 YQACPKPTRKNGNNDTYSAPQSFNGNEFSAP 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,767
Number of Sequences: 5004
Number of extensions: 26396
Number of successful extensions: 93
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)