Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120921.seq
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0054 - 367770-370166                                             31   1.1  
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56...    30   1.9  
01_06_0850 + 32444475-32444722,32445159-32445312,32445763-324461...    28   7.5  

>08_01_0054 - 367770-370166
          Length = 798

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = +1

Query: 322 HQAHIKMVVTLHRQLLRXLLDIVPAVXERAMDTQQVVQEVTKMMVTXAEXAGRVTPVTEQ 501
           H AH      LHR     ++D+  A+ + A  +  V   + + MV  A    +V P    
Sbjct: 36  HHAHHAFDELLHRPTTSSIVDLNRALSDAARHSPAVAISLFRRMVMVARP--KVPPNLIT 93

Query: 502 QSRIRRCCLRVRHV 543
            S +  CC RV H+
Sbjct: 94  YSVVIDCCSRVGHL 107


>08_01_0080 +
           566509-566746,566904-567151,567347-567532,567639-567734,
           567836-567907,567990-568106,570531-571676
          Length = 700

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 264 GYQ--PYEPPTADIYTQQSY-SAPSSYQDGGXSAPAAAQ 371
           GYQ  P +P   + Y Q  Y S P+S Q G  +APAA Q
Sbjct: 604 GYQGAPADPNYGNAYPQAGYGSTPASGQAGYAAAPAAGQ 642


>01_06_0850 +
           32444475-32444722,32445159-32445312,32445763-32446160,
           32446476-32446571,32446650-32446722,32446854-32447136,
           32447225-32447556,32447642-32447912,32448502-32448783,
           32449106-32449518
          Length = 849

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +1

Query: 238 SNGYVPHTLDISHMSHQLLIFIHNNH------TVHQAHIKMVVTLHRQLLRXLLDIVPAV 399
           S+G+  HT  I+  +H + + +  +H         +AHI +   L++       D+V A+
Sbjct: 262 SDGHGTHTASIAAGNHGIPVVVAGHHFGNASGMAPRAHIAVYKALYKSFGGFAADVVAAI 321

Query: 400 XERAMDTQQVV 432
            + A D   ++
Sbjct: 322 DQAAEDNVDII 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,992,286
Number of Sequences: 37544
Number of extensions: 199394
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)