Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120921.seq
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3592| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_42796| Best HMM Match : Fascin (HMM E-Value=5.4e-32)                28   7.6  
SB_54879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)               28   7.6  

>SB_3592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 210 GICWTSTSSIKWICTSHTGYQPYE 281
           G C+  TSS+K    +HTG +PY+
Sbjct: 136 GKCYNQTSSLKRHLRTHTGQKPYK 159


>SB_42796| Best HMM Match : Fascin (HMM E-Value=5.4e-32)
          Length = 243

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 238 SNGYVPHTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHRQLLRXLLDIVPAVXERAMD 417
           +NG V  T        Q  +  HNN    +AH  M +T ++Q    LLD  P + E    
Sbjct: 58  ANGPVSATEKTITPKAQFTMEYHNNQVAFKAHTGMYLTSNKQ--GQLLDGTPELEEAGKF 115

Query: 418 TQQVV 432
           + ++V
Sbjct: 116 SMEIV 120


>SB_54879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 238 SNGYVPHTLDISHMSHQLLIFIHNNHTVHQAHIKMVVTLHRQLLRXLLDIVPAVXERAMD 417
           +NG V  T        Q  +  HNN    +AH  M +T ++Q    LLD  P + E    
Sbjct: 40  ANGPVSATEKTITPKAQFTMEYHNNQVAFKAHTGMYLTSNKQ--GQLLDGTPELEEAGKF 97

Query: 418 TQQVV 432
           + ++V
Sbjct: 98  SMEIV 102


>SB_29745| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.04)
          Length = 1481

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 415 DTQQVVQEVTKMMVTXAEXAGRVTPVTEQQSRIRR 519
           D  Q++QE T++  T  E AGR    TE+   +++
Sbjct: 834 DLDQLLQEKTRLESTIHELAGRSVDTTEENDTLQK 868


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,310,625
Number of Sequences: 59808
Number of extensions: 207933
Number of successful extensions: 788
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)