Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120921.seq
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53153-2|AAQ91899.1|  422|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U53153-2|AAQ91899.1|  422|Caenorhabditis elegans Hypothetical
           protein T19A5.3b protein.
          Length = 422

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 513 TAVLPPRTTRIHNPPTTPIR 572
           T  LPP TT I+ PPTT  R
Sbjct: 216 TTTLPPETTTIYVPPTTASR 235


>U53153-1|AAC69039.4|  715|Caenorhabditis elegans Hypothetical
           protein T19A5.3a protein.
          Length = 715

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 513 TAVLPPRTTRIHNPPTTPIR 572
           T  LPP TT I+ PPTT  R
Sbjct: 284 TTTLPPETTTIYVPPTTASR 303


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 258 HTGYQPYEPPTADIYTQQSY 317
           H  Y P+ PP++D YT   Y
Sbjct: 241 HVAYMPHPPPSSDCYTYDYY 260


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 258 HTGYQPYEPPTADIYTQQSY 317
           H  Y P+ PP++D YT   Y
Sbjct: 241 HVAYMPHPPPSSDCYTYDYY 260


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 258 HTGYQPYEPPTADIYTQQSY 317
           H  Y P+ PP++D YT   Y
Sbjct: 241 HVAYMPHPPPSSDCYTYDYY 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,425,731
Number of Sequences: 27780
Number of extensions: 156446
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)