Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120921.seq
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66390.1 68418.m08372 peroxidase 72 (PER72) (P72) (PRXR8) ide...    29   3.6  

>At5g66390.1 68418.m08372 peroxidase 72 (PER72) (P72) (PRXR8)
           identical to SP|Q9FJZ9 Peroxidase 72 precursor (EC
           1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) {Arabidopsis
           thaliana}
          Length = 336

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 475 GRVTPVTEQQSRIRRCCLRVRHVF 546
           G ++P+T  +  IRR C RV H +
Sbjct: 313 GNISPLTGAKGEIRRICRRVNHAY 336


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,791,429
Number of Sequences: 28952
Number of extensions: 144282
Number of successful extensions: 503
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)