Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120920.seq
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032...    33   0.15 
08_02_1312 + 26055372-26056056,26056935-26057187,26057277-260580...    29   3.2  
11_03_0181 - 11301759-11301838,11302294-11303095                       29   4.3  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    29   4.3  
09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503     28   7.5  
02_05_1228 + 35086576-35087139,35089125-35089268,35090436-350906...    27   9.9  

>04_03_0686 +
           18701543-18701917,18702658-18702702,18703175-18703289,
           18703644-18703713,18703796-18703844,18704319-18704416,
           18704984-18705122,18705261-18705410
          Length = 346

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 420 AKFYNVIDFCKGLE-IAHDDILDCNWD 497
           A+FYNV   C  +E IAHD +LDC+WD
Sbjct: 306 ARFYNVQPVC--IEGIAHDMMLDCSWD 330


>08_02_1312 +
           26055372-26056056,26056935-26057187,26057277-26058081,
           26058828-26058952,26059081-26059165,26059473-26059626,
           26059724-26059761,26059842-26060109,26060257-26060380,
           26060508-26060868,26061904-26062272,26062528-26062609,
           26063042-26063193
          Length = 1166

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 653 CSNALLLL--SKFNRIQNFQQPLLGREQCAQRVGDRVWI 543
           C++ L+++     NR+Q FQ       QC + +G+RVW+
Sbjct: 411 CTDGLIIMWDGNGNRLQEFQHHC-SSVQCMKALGERVWV 448


>11_03_0181 - 11301759-11301838,11302294-11303095
          Length = 293

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 618 PHPKFSTTPAWSRTMRPT 565
           PH K  T+P WS T RPT
Sbjct: 231 PHVKCWTSPVWSATSRPT 248


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +3

Query: 348  IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSXQVTI 515
            ++ W +F+  +   K R  + D + K + +I+    +   HDDI+ C + S ++ I
Sbjct: 2833 VMIWHAFRGKSADKKSRNANYDLSTKDHVIIESPYHILCGHDDIITCLFVSTELDI 2888


>09_02_0512 + 10101274-10102248,10102363-10102748,10103807-10104503
          Length = 685

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 18  PYVCTFRICKIQTWTRSRCSIGRTW 92
           PY  T  + K     R+ CSIGR W
Sbjct: 55  PYAHTIELTKTDISDRNLCSIGRVW 79


>02_05_1228 +
           35086576-35087139,35089125-35089268,35090436-35090600,
           35090722-35090796,35091468-35091671
          Length = 383

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 459 EIAHDDILDCNWDSXQVTI*TKLFFTSRNPNAISNSLGALFATKQGLLKILD 614
           EI    + D  W    V + TKLF+  + PN    S   +    +G LK LD
Sbjct: 61  EIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLD 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,459,664
Number of Sequences: 37544
Number of extensions: 286895
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)