Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120920.seq
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6) 34 0.12
SB_55161| Best HMM Match : Kunitz_BPTI (HMM E-Value=6.3) 31 0.82
SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17) 30 1.9
SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6) 29 3.3
SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6) 29 3.3
SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043) 29 4.4
SB_2350| Best HMM Match : DUF883 (HMM E-Value=9.1) 29 4.4
SB_34049| Best HMM Match : PSI (HMM E-Value=2.6) 28 5.8
SB_33000| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_17477| Best HMM Match : PSI (HMM E-Value=1.7) 28 7.6
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 28 7.6
>SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)
Length = 288
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -1
Query: 408 CARICT*N-CACCI*MNPI*RCATIVGRLC 322
CAR T N CACC+ MN RC T+ G C
Sbjct: 244 CARCVTMNGCACCVTMNGYPRCVTMNGCAC 273
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 408 CARICT*N-CACCI*MNPI*RCATIVGRLC 322
CAR T N CA C+ MN RC T+ G C
Sbjct: 226 CARCVTMNGCARCVTMNGCARCVTMNGCAC 255
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 450 CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVG 331
C + C R + CAR T N CA C+ MN RC T+ G
Sbjct: 193 CVTIYDCARCVTMNGCARCVTMNGCARCVTMNGCARCVTMNG 234
>SB_55161| Best HMM Match : Kunitz_BPTI (HMM E-Value=6.3)
Length = 260
Score = 31.1 bits (67), Expect = 0.82
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = -1
Query: 498 CPNCNQVCRRAQFQDL--CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVG 331
C N R D C + C R + CAR T N CA C+ MN RC T+ G
Sbjct: 183 CVTMNGCARCVTMNDCARCVTIYDCARCVTMNGCARCVTMNGCARCVTMNGYPRCVTMNG 242
Query: 330 RLC 322
C
Sbjct: 243 CTC 245
>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
Length = 755
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 450 CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVG 331
C + C R + CAR T N CA C+ MN RC TI G
Sbjct: 687 CVTIYECARCVTMNGCARCVTMNGCARCVTMNGCARCVTING 728
>SB_17743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -1
Query: 408 CARICT*N-CACCI*MNPI*RCATIVGRLC 322
CAR T N CA C+ MN RC T+ G C
Sbjct: 216 CARCVTMNGCARCVTMNGCPRCVTMNGCTC 245
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 426 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 331
+ R RC + CACC+ MN RC T+ G
Sbjct: 168 VTRKKRCVTMN--GCACCVTMNGCSRCVTMNG 197
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
C+R T N CA C+ MN RC TI G
Sbjct: 189 CSRCVTMNGCARCVTMNGCARCVTIYG 215
>SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
Length = 224
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
CAR T N CA C+ MN RC TI G
Sbjct: 189 CARCVTMNGCARCVTMNGCARCVTIYG 215
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 426 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 331
+ R RC + CACC+ MN RC T+ G
Sbjct: 168 VTRGKRCVTMN--GCACCVTMNGCARCVTMNG 197
>SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
Length = 224
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
CAR T N CA C+ MN RC TI G
Sbjct: 189 CARCVTMNGCARCVTMNGCARCVTIYG 215
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 426 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 331
+ R RC + CACC+ MN RC T+ G
Sbjct: 168 VTRGKRCVTMN--GCACCVTMNGCARCVTMNG 197
>SB_21536| Best HMM Match : RVT_1 (HMM E-Value=0.0043)
Length = 831
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 3 ARGERPYVCTFRICKIQTWTRSR 71
AR PY T +ICK + WT+SR
Sbjct: 509 ARHGFPYPPTIKICKSKDWTKSR 531
>SB_2350| Best HMM Match : DUF883 (HMM E-Value=9.1)
Length = 405
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 5 TRREAVRLYIPHMQDSNLDALTLQYWPDVDRDIF--CNVNKQIR 130
TR RLY+PH +N ++ +PDV ++ NV++Q++
Sbjct: 118 TRHNDYRLYMPHRTSANYHSVENIPFPDVPPEVTSKANVSEQVK 161
>SB_34049| Best HMM Match : PSI (HMM E-Value=2.6)
Length = 279
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 450 CKNLLHC-RILRSCRCARICT*N-CACCI*MNPI*RCATIVGRLC 322
C + C R + C R T N CA C+ MN RC T+ G C
Sbjct: 185 CVTIYGCARCVTMNGCVRCVTMNGCARCVTMNGCPRCVTMNGCTC 229
>SB_33000| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 56 LDALTLQYWPDVDRDIFCNVNKQIRAPYSYNYKGTKFSRCITKELLDKLK 205
L ++ Q WP+V D+ ++ ++ +KG + KE++ K+K
Sbjct: 519 LKSIIRQGWPEVKDDVPVSIRDELSLQNGLVFKGERLEGKTAKEVMRKIK 568
>SB_17477| Best HMM Match : PSI (HMM E-Value=1.7)
Length = 206
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 426 ILRSCRCARICT*NCACCI*MNPI*RCATIVG 331
+ R RC + CACC+ MN RC T+ G
Sbjct: 96 VTRGKRCVTMN--GCACCVTMNGCSRCVTMNG 125
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
C+R T N CA C+ MN RC TI G
Sbjct: 117 CSRCVTMNGCARCVTMNGCARCVTIYG 143
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 408 CARICT*N-CACCI*MNPI*RCATIVG 331
CAR T N C CC+ MN C TI G
Sbjct: 171 CARCVTMNGCLCCVTMNGCTCCVTING 197
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -1
Query: 492 NCNQVCRRAQFQDLCKN--LLHCRILRSCRCARI--CT*NC 382
NC+QV + Q Q +C N L R+ + +C ++ C+ NC
Sbjct: 114 NCDQVVEQQQQQRMCANCGLAKIRLSKCGKCLKVYYCSRNC 154
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,792,763
Number of Sequences: 59808
Number of extensions: 364881
Number of successful extensions: 1150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -