Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120920.seq
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 29 2.2
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 27 8.8
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 27 8.8
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 27 8.8
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 27 8.8
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Frame = -1
Query: 495 PNCNQVCRRAQFQDLCKN----LLHCRILRSCRCARICT*NCA--CCI*MNPI*RCATIV 334
P C Q QF + +L + +S +C C +C C + PI +CAT
Sbjct: 469 PQCQQCQSACQFPVVAPQVVAVILEASVSQSAQCEPQCQQSCQQQCIQQLQPIQQCATAC 528
Query: 333 GRLCGTFCS 307
+ C CS
Sbjct: 529 TQSCSQSCS 537
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -1
Query: 489 CNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 373
C C R + C+ C R+C C R CT CC
Sbjct: 64 CGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCC 102
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -1
Query: 489 CNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 373
C C R + C+ C R+C C R CT CC
Sbjct: 66 CGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCC 104
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -1
Query: 489 CNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCACC 373
C C R + C+ C R+C C R CT CC
Sbjct: 69 CGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCCRPCC 107
>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
protein Y32H12A.8 protein.
Length = 3901
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 23 RLYIPHMQ-DSNLDALTLQYWPDVDRDIFCNVNK 121
R Y+P++ D + D++T WP D D+F K
Sbjct: 314 RPYLPYVTYDEHRDSVTDACWPSTDFDVFMTCGK 347
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -1
Query: 495 PNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCAC 376
P C CRR C C R C C R C C C
Sbjct: 91 PRCCCCCRRC-----CTCCRTCCCTRCCTCCRPCCCGCGC 125
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -1
Query: 495 PNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCAC 376
P C CRR C C R C C R C C C
Sbjct: 89 PRCCCCCRRC-----CTCCRTCCCTRCCTCCRPCCCGCGC 123
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -1
Query: 495 PNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCAC 376
P C CRR C C R C C R C C C
Sbjct: 90 PKCCCCCRRC-----CTCCRTCCCTRCCTCCRPCCCGCGC 124
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -1
Query: 495 PNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCAC 376
P C CRR C C R C C R C C C
Sbjct: 90 PRCCCCCRRC-----CTCCRTCCCTRCCTCCRPCCCGCGC 124
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -1
Query: 495 PNCNQVCRRAQFQDLCKNLLHCRILRSCRCARICT*NCAC 376
P C CRR C C R C C R C C C
Sbjct: 91 PRCCCCCRRC-----CTCCRTCCCTRCCTCCRPCCCGCGC 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,398
Number of Sequences: 27780
Number of extensions: 278617
Number of successful extensions: 934
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -