Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120920.seq
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03990.1 68418.m00379 expressed protein predicted protein, Ar...    30   1.2  
At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-rel...    28   4.7  
At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearl...    28   6.2  

>At5g03990.1 68418.m00379 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 302

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
 Frame = +3

Query: 306 DYKKYHINVQQWSH-----IVKWDSFKCNTHSFKYRYVHN 410
           D+   + N   W H        WD   CN +SF Y+ V N
Sbjct: 207 DHNNNNTNTDSWDHNNNFKAETWDQKNCNNNSFNYKKVEN 246


>At1g58230.1 68414.m06618 WD-40 repeat family protein / beige-related
            contains Pfam PF00400: WD domain, G-beta repeat; similar
            to Lipopolysaccharide-responsive and beige-like anchor
            protein (CDC4-like protein) (Beige-like protein)
            (SP:P50851) [Homo sapiens}
          Length = 1280

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +3

Query: 348  IVKWDSFKCNTHSFKYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSXQVTI 515
            ++ WD  +  T   + R  H +   K   + D    +   HDDI+ C + S  + I
Sbjct: 1070 VMVWDILRMRTPEKRVRNTHAEVLRKDIVIADAPSHILCGHDDIITCLYVSTDLDI 1125


>At1g55320.1 68414.m06319 acyl-activating enzyme 18 (AAE18) nearly
           identical to acyl-activating enzyme 18 [Arabidopsis
           thaliana] GI:29893268; similar to acetyl-CoA synthetase
           [SP|P27095] from Methanothrix soehngenii; contains Pfam
           AMP-binding enzyme domain PF00501l; identical to cDNA
           acyl-activating enzyme 18 (At1g55320) GI: 29893267
          Length = 725

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 48  IQTWTRSRCSIGRTWTGIFFVTLTNK 125
           ++TW R+ C  G  WT I F   T +
Sbjct: 452 VKTWKRTNCMEGLNWTKIKFFATTGE 477


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,674,035
Number of Sequences: 28952
Number of extensions: 240602
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)