Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120919.seq
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    29   0.55 
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   3.9  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   6.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   6.8  

>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 616 KKKRLLYSLHFKWNLWLELSLKIILKKRQKFIE 518
           K K  ++++   WN+WL    KI  K++ KF E
Sbjct: 358 KYKDSMFTVKTNWNMWLSQVQKINEKEKDKFYE 390


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 199 QGATGYWSSFSLVVLGTFPLIVMFLLA 119
           Q  TG W+   +V+   F ++V+FLLA
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLA 172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -3

Query: 251 YLEH-SRATHYEDEESKEP 198
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 525  SSKILHRYLNVPNNLMYRRP 466
            ++ ++  Y+N+P+N  YRRP
Sbjct: 1463 ANNMIDMYINLPSNNRYRRP 1482


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 263 LLIDYLEHSRATHYEDEESKEP 198
           LL D+ EHSRA H  D  S  P
Sbjct: 126 LLYDFNEHSRAVHKLDISSFHP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,527
Number of Sequences: 5004
Number of extensions: 55900
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)