Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120919.seq
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           29   2.4  
SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_15365| Best HMM Match : U79_P34 (HMM E-Value=1.8)                   28   7.2  
SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                 27   9.5  

>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +3

Query: 117 IASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIINQ*D*LKSRRQLE 293
           +A++N    G  P+   ++ D+  + P     F++++ G+AVFQ I   +  + R   E
Sbjct: 128 LANQNKRFMGKSPRIGPKRPDE-KLTPRTTLFFVYLLFGAAVFQTIESGEERRERHHFE 185


>SB_22055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 244 NTAEPHTTKMKRARSQGATGYWSSFSLVVLGTFPLIVMFL 125
           +TAEPHT   +  ++ G  G W  F +  L T PL+V  L
Sbjct: 138 STAEPHT---EMRQTSGCQGLWGQFIISALLT-PLVVHLL 173


>SB_15365| Best HMM Match : U79_P34 (HMM E-Value=1.8)
          Length = 992

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 188 CGTLAPCS-LHLRSVWLCCVPDNQSI 262
           CG+ AP S LH    W+ C PD+Q +
Sbjct: 849 CGSAAPSSRLHDIKGWIWCQPDSQQL 874


>SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 890

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 607 RLLYSLHFKWNLWLELSLKIILKKRQKFI 521
           R L+  H     W+   +K ++ KRQKF+
Sbjct: 389 RTLFGAHSSDKAWMTSKIKALIAKRQKFL 417


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,561,016
Number of Sequences: 59808
Number of extensions: 404556
Number of successful extensions: 796
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)