Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120918.seq
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    28   1.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.1  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   5.5  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.2  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   9.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   9.5  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   9.5  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 166 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK 255
           N+++  +L+  +  + N+D L+A VNFL K
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSK 172


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +3

Query: 306  KMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPAMWDLVKNTPELADFV 455
            K + +K  V+ N   IL NS   W   IK+P   S P   D   N  +L   +
Sbjct: 923  KSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQLL 975


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +3

Query: 285  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 377
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 350 VFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFSKKFTIAISWSM 216
           ++I +  L LA G FA++  DR+ V+     +FS  F  A+  S+
Sbjct: 102 IWITLLILALAVGGFAYIDVDRNLVQGAAMKIFSFTFQTALPISI 146


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 58  NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 225
           ++SS+ +   F    ++    + EQ  S +     K  ++LN L    YN  N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 312 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 443
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 461 NEHKICQFGRVFHQIPHGRATRPLGLLDLSV 369
           N +K+C FG   H IP  +       L+  +
Sbjct: 178 NSYKLCDFGSACHPIPGAKTAAEAKQLEYDI 208


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 147 NCGRVQ-K*KVVE*TGIELLQQIQHGPANCYCKFLGKKNINYILNVMPVMQDERKMSKRK 323
           N G VQ K  V   + IE L + +    + Y   L  +NIN + +V+PV Q +       
Sbjct: 176 NIGSVQEKCTVKHRSQIENLDEYKSQAKSYYFDRLFDQNINKVFDVVPVTQVKNAPDDVL 235

Query: 324 KKVINNNKYIL 356
           + +  N  +I+
Sbjct: 236 EDLFKNYDFIV 246


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 334 LTTINTFCLTVGTLRSSSPSGLVARPC 414
           L T+N    TVG +  S   GL+A+ C
Sbjct: 219 LATLNILAQTVGFMAGSFLGGLLAKAC 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,948
Number of Sequences: 5004
Number of extensions: 59571
Number of successful extensions: 189
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)