Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120918.seq
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940...    30   1.9  
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   3.2  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   5.6  
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    28   7.5  
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206     27   9.9  
03_03_0120 - 14608688-14608936,14609249-14609638                       27   9.9  
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668...    27   9.9  

>10_07_0113 -
           12993300-12993413,12993493-12993775,12993856-12994026,
           12994104-12994948,12995035-12995307,12995549-12995953
          Length = 696

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +2

Query: 500 PIDSSFFKRQRSQFQRAKXDRLRCLPTQIWAELKESCEMRDKLYSEFYSL 649
           P D + +++   + + +K  +  C+ TQ+  ELKE  E+R++L +E   +
Sbjct: 126 PEDQAMYQKIYKKHKLSKAQKATCIKTQLREELKE--ELREELTAELLGM 173


>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 321 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 455
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 369 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 479
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 485 THLFSVIKNEHKICQFGRVFHQIP 414
           TH F  +K E+ IC F R    IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221


>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
          Length = 961

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 18  FITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 137
           FIT     C+    + +KN   +FQR T+I  G   G  +
Sbjct: 806 FITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845


>03_03_0120 - 14608688-14608936,14609249-14609638
          Length = 212

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 564 SLSXFARWNWLRCRLKNDESIGRPFFYP 481
           +L  FA + WLRCR ++  ++ RP+  P
Sbjct: 56  TLLEFAAFLWLRCRGRHAAALKRPYRVP 83


>01_05_0501 +
           22764978-22765896,22766087-22766349,22766613-22766836,
           22767419-22767749,22767968-22768372
          Length = 713

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +1

Query: 163 KNEKLLNKLESSSYNKSNMDQLIAIVNFLEKRTLTISST*CLSCRTNAK 309
           KN  LL +LES  ++K + +++   +  L+ R +++     L+C + +K
Sbjct: 405 KNTSLLQRLESGDHDKLHAEKVRDNIEELQARIISLEEAVGLTCLSISK 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,900,534
Number of Sequences: 37544
Number of extensions: 369899
Number of successful extensions: 881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)